CHPF2 (chondroitin polymerizing factor 2) - Rat Genome Database

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Gene: CHPF2 (chondroitin polymerizing factor 2) Canis lupus familiaris
Analyze
Symbol: CHPF2
Name: chondroitin polymerizing factor 2
RGD ID: 19259580
Description: ENCODES a protein that exhibits acetylgalactosaminyltransferase activity (inferred); hexosyltransferase activity (inferred); transferase activity (inferred); FOUND IN Golgi apparatus (inferred); Golgi cisterna membrane (inferred); membrane (inferred)
Type: protein-coding
Latest Assembly: CanFam3.1 Ensembl - Dog CanFam3.1 Assembly Ensembl
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl1615,271,805 - 15,280,024 (+)EnsemblCanFam3.1canFam3CanFam3.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 16 6 6 12 8 10 2
Low 5 5 6 6 6 6 4
Below cutoff

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENSCAFT00000007821   ⟹   ENSCAFP00000007249
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1615,274,956 - 15,279,081 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000062921   ⟹   ENSCAFP00000048448
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1615,274,956 - 15,280,024 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000070598   ⟹   ENSCAFP00000052922
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1615,271,805 - 15,280,024 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000075355   ⟹   ENSCAFP00000055231
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1615,273,675 - 15,280,024 (+)Ensembl
Protein Sequences
Ensembl Protein ENSCAFP00000048448.2
  ENSCAFP00040011067.1
Reference Protein Sequences
RefSeq Acc Id: ENSCAFP00000052922   ⟸   ENSCAFT00000070598
RefSeq Acc Id: ENSCAFP00000048448   ⟸   ENSCAFT00000062921
RefSeq Acc Id: ENSCAFP00000055231   ⟸   ENSCAFT00000075355
RefSeq Acc Id: ENSCAFP00000007249   ⟸   ENSCAFT00000007821


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000004853 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00040006835 UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000062921.2 UniProtKB/TrEMBL
  ENSCAFT00040012771.1 UniProtKB/TrEMBL
Gene3D-CATH 3.90.550.50 UniProtKB/TrEMBL
InterPro Chond_GalNAc UniProtKB/TrEMBL
PANTHER CHONDROITIN SULFATE GLUCURONYLTRANSFERASE UniProtKB/TrEMBL
  CHONDROITIN SYNTHASE UniProtKB/TrEMBL
Pfam CHGN UniProtKB/TrEMBL
UniProt A0A8C0QBT6_CANLF UniProtKB/TrEMBL