Ms4a13 (membrane spanning 4-domains A13) - Rat Genome Database

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Gene: Ms4a13 (membrane spanning 4-domains A13) Heterocephalus glaber
Analyze
Symbol: Ms4a13
Name: membrane spanning 4-domains A13
RGD ID: 18936987
Description: ASSOCIATED WITH genetic disease (ortholog); intellectual disability (ortholog); leukocyte adhesion deficiency 3 (ortholog); FOUND IN membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: membrane-spanning 4-domains subfamily A member 13
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624926106,016 - 124,276 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624926106,021 - 132,594 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Ms4a13
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624926106,016 - 124,276 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624926106,021 - 132,594 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
MS4A13
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381160,515,392 - 60,543,424 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1160,515,392 - 60,542,721 (+)EnsemblGRCh38hg38GRCh38
GRCh371160,282,865 - 60,310,194 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361160,039,462 - 60,066,770 (+)NCBINCBI36Build 36hg18NCBI36
Celera1157,647,152 - 57,674,463 (+)NCBICelera
Cytogenetic Map11q12.2NCBI
HuRef1156,629,329 - 56,656,654 (+)NCBIHuRef
CHM1_11160,148,958 - 60,176,361 (+)NCBICHM1_1
T2T-CHM13v2.01160,466,529 - 60,494,810 (+)NCBIT2T-CHM13v2.0
Ms4a13
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391911,146,782 - 11,174,101 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1911,146,782 - 11,174,101 (-)EnsemblGRCm39 Ensembl
GRCm381911,169,418 - 11,196,737 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1911,169,418 - 11,196,737 (-)EnsemblGRCm38mm10GRCm38
MGSCv371911,243,908 - 11,271,213 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361911,236,463 - 11,263,768 (-)NCBIMGSCv36mm8
Celera1911,859,115 - 11,886,418 (-)NCBICelera
Cytogenetic Map19ANCBI
cM Map197.92NCBI
Ms4a13-ps1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81217,268,355 - 217,297,046 (-)NCBIGRCr8
mRatBN7.21207,843,457 - 207,872,137 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1207,843,432 - 207,872,137 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01227,365,517 - 227,395,001 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1227,370,800 - 227,392,054 (-)NCBIRnor6.0rn6Rnor6.0
Rnor_5.01234,430,404 - 234,459,896 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41213,703,493 - 213,726,219 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1205,319,496 - 205,347,161 (-)NCBICelera
Cytogenetic Map1q43NCBI
Ms4a13
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555115,355,848 - 5,377,600 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555115,355,848 - 5,375,025 (+)NCBIChiLan1.0ChiLan1.0
MS4A13
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2961,657,173 - 61,696,085 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11162,701,344 - 62,740,242 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01155,751,204 - 55,771,870 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11159,193,880 - 59,214,398 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1159,193,880 - 59,214,391 (+)Ensemblpanpan1.1panPan2
MS4A13
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11855,740,313 - 55,762,266 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1855,740,740 - 55,762,262 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1854,252,354 - 54,274,279 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01856,727,249 - 56,749,129 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1856,727,253 - 56,748,693 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11855,784,563 - 55,806,542 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01855,406,067 - 55,427,946 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01856,310,850 - 56,332,785 (-)NCBIUU_Cfam_GSD_1.0
Ms4a13
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494712,276,606 - 12,309,027 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365812,391,693 - 2,420,449 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365812,410,947 - 2,422,822 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MS4A13
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl211,141,853 - 11,169,012 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1211,125,705 - 11,163,656 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2210,714,103 - 10,728,472 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MS4A13
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1113,281,867 - 13,306,736 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl113,282,022 - 13,299,227 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038110,624,740 - 110,647,254 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000003716   ⟹   ENSHGLP00000003661
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_004624926106,016 - 124,276 (+)Ensembl
RefSeq Acc Id: XM_004874261   ⟹   XP_004874318
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624926106,021 - 124,285 (+)NCBI
RefSeq Acc Id: XM_021251873   ⟹   XP_021107532
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624926106,021 - 132,594 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004874318 (Get FASTA)   NCBI Sequence Viewer  
  XP_021107532 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000003661
Reference Protein Sequences
RefSeq Acc Id: XP_021107532   ⟸   XM_021251873
- Peptide Label: isoform X2
RefSeq Acc Id: XP_004874318   ⟸   XM_004874261
- Peptide Label: isoform X1
- UniProtKB: A0A0P6IVS0 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000003661   ⟸   ENSHGLT00000003716


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000002700 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000003716 ENTREZGENE
InterPro CD20-like UniProtKB/TrEMBL
  MS4A UniProtKB/TrEMBL
NCBI Gene Ms4a13 ENTREZGENE
PANTHER MEMBRANE-SPANNING 4-DOMAINS SUBFAMILY A MEMBER 13 UniProtKB/TrEMBL
  PTHR23320 UniProtKB/TrEMBL
Pfam CD20 UniProtKB/TrEMBL
UniProt A0A0P6IVS0 ENTREZGENE, UniProtKB/TrEMBL