Bod1 (biorientation of chromosomes in cell division 1) - Rat Genome Database

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Gene: Bod1 (biorientation of chromosomes in cell division 1) Heterocephalus glaber
Analyze
Symbol: Bod1
Name: biorientation of chromosomes in cell division 1
RGD ID: 18936935
Description: ENCODES a protein that exhibits protein phosphatase 2A binding (ortholog); protein phosphatase inhibitor activity (ortholog); INVOLVED IN mitotic metaphase chromosome alignment (ortholog); mitotic sister chromatid biorientation (ortholog); mitotic sister chromatid cohesion, centromeric (ortholog); ASSOCIATED WITH intellectual disability (ortholog); FOUND IN centrosome (ortholog); outer kinetochore (ortholog); Set1C/COMPASS complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Biorientation of chromosomes in cell division protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473316,459,383 - 16,469,343 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:21993625  


Genomics

Comparative Map Data
Bod1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473316,459,383 - 16,469,343 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
BOD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385173,607,145 - 173,616,650 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5173,607,145 - 173,616,659 (-)EnsemblGRCh38hg38GRCh38
GRCh375173,034,148 - 173,043,653 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365172,967,146 - 172,976,262 (-)NCBINCBI36Build 36hg18NCBI36
Build 345172,967,149 - 172,976,262NCBI
Celera5169,066,406 - 169,075,924 (-)NCBICelera
Cytogenetic Map5q35.2NCBI
HuRef5168,129,859 - 168,139,374 (-)NCBIHuRef
CHM1_15172,466,671 - 172,476,189 (-)NCBICHM1_1
T2T-CHM13v2.05174,147,207 - 174,156,712 (-)NCBIT2T-CHM13v2.0
Bod1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391131,615,150 - 31,621,862 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1131,615,181 - 31,621,885 (-)EnsemblGRCm39 Ensembl
GRCm381131,665,150 - 31,671,862 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1131,665,181 - 31,671,885 (-)EnsemblGRCm38mm10GRCm38
MGSCv371131,565,150 - 31,571,862 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361131,565,150 - 31,571,862 (-)NCBIMGSCv36mm8
Celera1134,080,907 - 34,087,599 (-)NCBICelera
Cytogenetic Map11A4NCBI
cM Map1118.55NCBI
Bod1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81016,497,918 - 16,504,259 (+)NCBIGRCr8
mRatBN7.21015,993,454 - 15,999,795 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1015,993,454 - 15,999,787 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1020,740,896 - 20,747,237 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01020,229,826 - 20,236,167 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01015,719,433 - 15,725,773 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01016,259,728 - 16,266,069 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1016,259,728 - 16,266,061 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01016,152,118 - 16,158,459 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41016,255,404 - 16,261,741 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11016,256,452 - 16,262,788 (+)NCBI
Celera1015,659,266 - 15,665,607 (+)NCBICelera
Cytogenetic Map10q12NCBI
Bod1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495540826,235,229 - 26,242,576 (-)NCBIChiLan1.0ChiLan1.0
BOD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24168,734,263 - 168,743,408 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15166,873,789 - 166,882,948 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05168,951,787 - 168,960,934 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15175,857,814 - 175,866,951 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5175,857,814 - 175,866,951 (-)Ensemblpanpan1.1panPan2
BOD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1438,888,096 - 38,895,539 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha438,834,963 - 38,842,274 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0439,259,503 - 39,266,976 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1439,077,779 - 39,085,242 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0439,266,320 - 39,273,785 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0439,774,971 - 39,782,432 (+)NCBIUU_Cfam_GSD_1.0
Bod1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721393,357,695 - 93,425,351 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049366092,034,271 - 2,096,274 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BOD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11650,734,510 - 50,743,417 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21654,988,365 - 54,996,776 (-)NCBISscrofa10.2Sscrofa10.2susScr3
BOD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12375,761,476 - 75,771,205 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660342,834,544 - 2,844,425 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_004836366   ⟹   XP_004836423
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473316,459,384 - 16,469,343 (+)NCBI
RefSeq Acc Id: XM_021239414   ⟹   XP_021095073
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473316,459,383 - 16,469,343 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004836423 (Get FASTA)   NCBI Sequence Viewer  
  XP_021095073 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB08401 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000015545
GenBank Protein JAN98425 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_021095073   ⟸   XM_021239414
- UniProtKB: A0A0P6J2L8 (UniProtKB/TrEMBL),   G5BGJ0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004836423   ⟸   XM_004836366
- UniProtKB: A0A0P6J2L8 (UniProtKB/TrEMBL),   G5BGJ0 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000011125 ENTREZGENE
Ensembl Transcript ENSHGLT00000015709 ENTREZGENE
InterPro Bod1-like UniProtKB/TrEMBL
KEGG Report hgl:101723040 UniProtKB/TrEMBL
NCBI Gene Bod1 ENTREZGENE
PANTHER BIORIENTATION OF CHROMOSOMES IN CELL DIVISION PROTEIN 1-LIKE 1 UniProtKB/TrEMBL
  PTHR31532 UniProtKB/TrEMBL
Pfam COMPASS-Shg1 UniProtKB/TrEMBL
UniProt A0A0P6J2L8 ENTREZGENE, UniProtKB/TrEMBL
  G5BGJ0 ENTREZGENE, UniProtKB/TrEMBL