Slc7a10 (solute carrier family 7 member 10) - Rat Genome Database

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Gene: Slc7a10 (solute carrier family 7 member 10) Heterocephalus glaber
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Symbol: Slc7a10
Name: solute carrier family 7 member 10
RGD ID: 18936866
Description: ENCODES a protein that exhibits L-amino acid transmembrane transporter activity (inferred); neutral L-amino acid transmembrane transporter activity (inferred); transmembrane transporter activity (inferred); INVOLVED IN D-alanine transmembrane transport (ortholog); D-serine transmembrane transport (ortholog); glycine transport (ortholog); ASSOCIATED WITH acute myeloid leukemia (ortholog); genetic disease (ortholog); hereditary spastic paraplegia 75 (ortholog); FOUND IN apical dendrite (ortholog); neuronal cell body (ortholog); plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: asc-type amino acid transporter 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247949,876,606 - 9,891,366 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247949,876,197 - 9,891,398 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Slc7a10
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247949,876,606 - 9,891,366 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247949,876,197 - 9,891,398 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
SLC7A10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381933,208,664 - 33,225,850 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1933,208,664 - 33,225,850 (-)EnsemblGRCh38hg38GRCh38
GRCh371933,699,570 - 33,716,756 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361938,391,411 - 38,408,548 (-)NCBINCBI36Build 36hg18NCBI36
Build 341938,391,410 - 38,408,548NCBI
Celera1930,393,162 - 30,410,341 (-)NCBICelera
Cytogenetic Map19q13.11NCBI
HuRef1930,201,437 - 30,218,673 (-)NCBIHuRef
CHM1_11933,700,507 - 33,717,756 (-)NCBICHM1_1
T2T-CHM13v2.01935,727,305 - 35,744,598 (-)NCBIT2T-CHM13v2.0
Slc7a10
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39734,885,520 - 34,900,539 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl734,885,810 - 34,900,539 (+)EnsemblGRCm39 Ensembl
GRCm38735,186,095 - 35,201,116 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl735,186,385 - 35,201,114 (+)EnsemblGRCm38mm10GRCm38
MGSCv37735,971,404 - 35,986,130 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36734,895,178 - 34,909,870 (+)NCBIMGSCv36mm8
Celera730,326,223 - 30,340,996 (+)NCBICelera
Cytogenetic Map7B2NCBI
cM Map721.13NCBI
Slc7a10
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8196,966,030 - 96,982,020 (+)NCBIGRCr8
mRatBN7.2187,829,084 - 87,845,073 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl187,829,175 - 87,845,071 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx193,235,422 - 93,251,543 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01101,701,408 - 101,717,518 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0194,993,724 - 95,009,846 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0191,432,952 - 91,448,566 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl191,433,030 - 91,448,564 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0192,563,339 - 92,579,264 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4187,695,658 - 87,711,595 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1187,773,768 - 87,789,704 (+)NCBI
Celera182,180,310 - 82,195,867 (+)NCBICelera
Cytogenetic Map1q21NCBI
Slc7a10
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554682,968,720 - 2,984,125 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554682,968,720 - 2,984,101 (-)NCBIChiLan1.0ChiLan1.0
SLC7A10
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22039,181,203 - 39,198,257 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11941,180,514 - 41,197,587 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01930,130,974 - 30,148,055 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11938,876,098 - 38,893,018 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1938,876,098 - 38,893,018 (-)Ensemblpanpan1.1panPan2
SLC7A10
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11118,908,087 - 118,923,034 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1118,907,184 - 118,923,215 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1118,308,994 - 118,323,875 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01119,506,650 - 119,521,536 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1119,506,605 - 119,521,705 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11119,067,024 - 119,081,913 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01118,693,471 - 118,708,387 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01119,752,439 - 119,767,380 (+)NCBIUU_Cfam_GSD_1.0
Slc7a10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244093499,056,066 - 9,070,105 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365702,575,386 - 2,593,299 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365702,575,784 - 2,589,808 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC7A10
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl643,002,431 - 43,017,554 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1643,002,427 - 43,017,605 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2638,579,833 - 38,595,001 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103234456
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1628,249,906 - 28,267,262 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl628,249,278 - 28,267,221 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660735,886,131 - 5,903,492 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


RefSeq Acc Id: ENSHGLT00000021456   ⟹   ENSHGLP00000021250
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247949,876,606 - 9,891,366 (+)Ensembl
RefSeq Acc Id: XM_004858919   ⟹   XP_004858976
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247949,876,554 - 9,891,398 (+)NCBI
RefSeq Acc Id: XM_021239568   ⟹   XP_021095227
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247949,876,545 - 9,891,398 (+)NCBI
RefSeq Acc Id: XM_021239569   ⟹   XP_021095228
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247949,876,547 - 9,891,398 (+)NCBI
RefSeq Acc Id: XM_021239570   ⟹   XP_021095229
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247949,876,455 - 9,891,398 (+)NCBI
RefSeq Acc Id: XM_021239571   ⟹   XP_021095230
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247949,876,455 - 9,891,398 (+)NCBI
RefSeq Acc Id: XM_021239572   ⟹   XP_021095231
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247949,876,551 - 9,891,398 (+)NCBI
RefSeq Acc Id: XM_021239573   ⟹   XP_021095232
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247949,876,197 - 9,890,975 (+)NCBI
RefSeq Acc Id: XM_021239574   ⟹   XP_021095233
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247949,885,835 - 9,891,398 (+)NCBI
RefSeq Acc Id: XP_021095232   ⟸   XM_021239573
- Peptide Label: isoform X7
RefSeq Acc Id: XP_021095229   ⟸   XM_021239570
- Peptide Label: isoform X3
RefSeq Acc Id: XP_021095230   ⟸   XM_021239571
- Peptide Label: isoform X4
RefSeq Acc Id: XP_021095227   ⟸   XM_021239568
- Peptide Label: isoform X1
RefSeq Acc Id: XP_021095228   ⟸   XM_021239569
- Peptide Label: isoform X2
RefSeq Acc Id: XP_021095231   ⟸   XM_021239572
- Peptide Label: isoform X5
- UniProtKB: G5BXM5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004858976   ⟸   XM_004858919
- Peptide Label: isoform X6
- UniProtKB: A0A0P6K513 (UniProtKB/TrEMBL),   G5BXM5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021095233   ⟸   XM_021239574
- Peptide Label: isoform X8
RefSeq Acc Id: ENSHGLP00000021250   ⟸   ENSHGLT00000021456


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000015188 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000021456 ENTREZGENE
Gene3D-CATH Amino acid/polyamine transporter I UniProtKB/TrEMBL
InterPro AA/rel_permease1 UniProtKB/TrEMBL
KEGG Report hgl:101697180 UniProtKB/TrEMBL
NCBI Gene Slc7a10 ENTREZGENE
PANTHER AMINO ACID TRANSPORTER UniProtKB/TrEMBL
  ASC-TYPE AMINO ACID TRANSPORTER 1 UniProtKB/TrEMBL
Pfam AA_permease_2 UniProtKB/TrEMBL
PIRSF AA_transporter UniProtKB/TrEMBL
UniProt A0A0P6K513 ENTREZGENE, UniProtKB/TrEMBL
  G5BXM5 ENTREZGENE, UniProtKB/TrEMBL