Naa38 (N-alpha-acetyltransferase 38, NatC auxiliary subunit) - Rat Genome Database

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Gene: Naa38 (N-alpha-acetyltransferase 38, NatC auxiliary subunit) Heterocephalus glaber
Analyze
Symbol: Naa38
Name: N-alpha-acetyltransferase 38, NatC auxiliary subunit (Ensembl:N(alpha)-acetyltransferase 38, NatC auxiliary subunit)
RGD ID: 18936853
Description: ENCODES a protein that exhibits RNA binding (inferred); INVOLVED IN negative regulation of apoptotic process (inferred); ASSOCIATED WITH common variable immunodeficiency (ortholog); Diamond-Blackfan anemia (ortholog); dyskeratosis congenita (ortholog); FOUND IN NatC complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LSM domain containing 1; Lsmd1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478610,436,970 - 10,437,890 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478610,436,970 - 10,437,882 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)
NatC complex  (IEA,ISO)
nucleoplasm  (IEA)
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:22301074  


Genomics

Comparative Map Data
Naa38
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478610,436,970 - 10,437,890 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478610,436,970 - 10,437,882 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
NAA38
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38177,856,685 - 7,885,420 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl177,856,685 - 7,885,238 (-)EnsemblGRCh38hg38GRCh38
GRCh37177,760,003 - 7,788,738 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36177,700,728 - 7,701,897 (-)NCBINCBI36Build 36hg18NCBI36
Celera177,787,824 - 7,788,993 (-)NCBICelera
Cytogenetic Map17p13.1NCBI
HuRef177,654,716 - 7,655,885 (-)NCBIHuRef
CHM1_1177,768,978 - 7,770,147 (-)NCBICHM1_1
T2T-CHM13v2.0177,762,011 - 7,790,803 (-)NCBIT2T-CHM13v2.0
Naa38
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391169,286,617 - 69,287,497 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1169,286,313 - 69,287,506 (+)EnsemblGRCm39 Ensembl
GRCm381169,395,791 - 69,396,671 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1169,395,487 - 69,396,680 (+)EnsemblGRCm38mm10GRCm38
MGSCv371169,209,293 - 69,210,173 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361169,211,986 - 69,212,866 (+)NCBIMGSCv36mm8
Celera1176,350,281 - 76,351,161 (+)NCBICelera
Cytogenetic Map11B3NCBI
cM Map1142.59NCBI
Naa38
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81054,588,304 - 54,617,715 (+)NCBIGRCr8
mRatBN7.21054,117,754 - 54,118,913 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1054,117,163 - 54,119,494 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1058,779,588 - 58,780,665 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01058,268,204 - 58,269,281 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01053,776,298 - 53,777,375 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01055,997,614 - 55,998,691 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1055,997,614 - 55,998,691 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01055,711,455 - 55,740,766 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41056,190,119 - 56,191,724 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1053,274,333 - 53,275,410 (+)NCBICelera
Cytogenetic Map10q24NCBI
Naa38
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554679,082,244 - 9,082,977 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554679,082,104 - 9,083,024 (+)NCBIChiLan1.0ChiLan1.0
NAA38
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21915,454,703 - 15,483,856 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11717,420,729 - 17,421,567 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0177,891,617 - 7,921,183 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1177,878,102 - 7,904,823 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl177,878,102 - 7,887,932 (-)Ensemblpanpan1.1panPan2
NAA38
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1532,712,799 - 32,714,493 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl532,712,805 - 32,713,600 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha532,850,528 - 32,852,254 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0532,816,267 - 32,817,993 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl532,816,273 - 32,817,068 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1532,784,110 - 32,785,836 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0532,740,283 - 32,742,009 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0532,919,278 - 32,921,004 (-)NCBIUU_Cfam_GSD_1.0
Naa38
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560247,626,587 - 47,627,432 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365951,098,424 - 1,102,508 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365951,100,774 - 1,101,909 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NAA38
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11253,111,249 - 53,112,487 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21255,477,354 - 55,478,619 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NAA38
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1167,244,221 - 7,245,410 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl167,244,227 - 7,245,081 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605914,163,591 - 14,164,785 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000020203   ⟹   ENSHGLP00000020003
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462478610,436,970 - 10,437,890 (-)Ensembl
RefSeq Acc Id: XM_004857458   ⟹   XP_004857515
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462478610,436,970 - 10,437,881 (-)NCBI
RefSeq Acc Id: XM_021238427   ⟹   XP_021094086
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462478610,436,970 - 10,437,882 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004857515 (Get FASTA)   NCBI Sequence Viewer  
  XP_021094086 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB04503 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000020003
  ENSHGLP00000049637
  ENSHGLP00100058593
Reference Protein Sequences
RefSeq Acc Id: XP_021094086   ⟸   XM_021238427
- Peptide Label: isoform X1
RefSeq Acc Id: XP_004857515   ⟸   XM_004857458
- Peptide Label: isoform X2
- UniProtKB: G5B5E2 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000020003   ⟸   ENSHGLT00000020203


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000014324 Ensembl, ENTREZGENE
  ENSHGLG00000033435 UniProtKB/TrEMBL
  ENSHGLG00100013112 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000020203 ENTREZGENE
  ENSHGLT00000056822 UniProtKB/TrEMBL
  ENSHGLT00100077488 UniProtKB/TrEMBL
Gene3D-CATH 2.30.30.100 UniProtKB/TrEMBL
InterPro IPR047575 UniProtKB/TrEMBL
  LSM_dom_euk/arc UniProtKB/TrEMBL
  LSM_dom_sf UniProtKB/TrEMBL
  LSMD1 UniProtKB/TrEMBL
KEGG Report hgl:101705076 UniProtKB/TrEMBL
NCBI Gene Naa38 ENTREZGENE
PANTHER N-ALPHA-ACETYLTRANSFERASE 38, NATC AUXILIARY SUBUNIT UniProtKB/TrEMBL
  SMALL NUCLEAR RIBONUCLEOPROTEIN-ASSOCIATED PROTEIN B AND N UniProtKB/TrEMBL
Pfam LSM UniProtKB/TrEMBL
PROSITE PS52002 UniProtKB/TrEMBL
SMART SM00651 UniProtKB/TrEMBL
Superfamily-SCOP SSF50182 UniProtKB/TrEMBL
UniProt G5B5E2 ENTREZGENE, UniProtKB/TrEMBL