Slc44a5 (solute carrier family 44 member 5) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Slc44a5 (solute carrier family 44 member 5) Heterocephalus glaber
Analyze
Symbol: Slc44a5
Name: solute carrier family 44 member 5
RGD ID: 18936669
Description: ENCODES a protein that exhibits choline transmembrane transporter activity (ortholog); INVOLVED IN choline transport (ortholog); ASSOCIATED WITH genetic disease (ortholog); medium chain acyl-CoA dehydrogenase deficiency (ortholog); FOUND IN membrane (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Choline transporter-like protein 5
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474221,555,828 - 21,610,197 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474221,258,331 - 21,610,174 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Slc44a5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474221,555,828 - 21,610,197 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474221,258,331 - 21,610,174 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
SLC44A5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38175,202,129 - 75,724,015 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl175,202,129 - 75,611,114 (-)EnsemblGRCh38hg38GRCh38
GRCh37175,667,814 - 76,081,848 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36175,444,868 - 75,849,359 (-)NCBINCBI36Build 36hg18NCBI36
Celera173,913,149 - 74,316,659 (-)NCBICelera
Cytogenetic Map1p31.1NCBI
HuRef173,802,694 - 74,206,558 (-)NCBIHuRef
CHM1_1175,783,194 - 76,192,037 (-)NCBICHM1_1
T2T-CHM13v2.0175,043,976 - 75,561,339 (-)NCBIT2T-CHM13v2.0
Slc44a5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393153,679,056 - 153,977,384 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3153,679,073 - 153,977,359 (+)EnsemblGRCm39 Ensembl
GRCm383153,973,436 - 154,271,747 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3153,973,436 - 154,271,722 (+)EnsemblGRCm38mm10GRCm38
MGSCv373153,636,400 - 153,934,686 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363153,910,822 - 154,207,015 (+)NCBIMGSCv36mm8
Celera3160,437,074 - 160,731,740 (+)NCBICelera
Cytogenetic Map3H3- H4NCBI
cM Map378.82NCBI
Slc44a5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82245,570,875 - 245,866,369 (+)NCBIGRCr8
mRatBN7.22242,911,050 - 243,208,018 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2242,911,325 - 243,206,404 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2250,967,531 - 251,028,962 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02248,861,361 - 248,922,802 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02243,760,346 - 243,821,664 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02260,185,238 - 260,535,723 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2260,249,566 - 260,535,721 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02279,063,185 - 279,199,805 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42252,123,384 - 252,176,449 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2235,074,347 - 235,135,091 (+)NCBICelera
Cytogenetic Map2q45NCBI
Slc44a5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542317,422,056 - 17,617,182 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542317,260,324 - 17,615,777 (+)NCBIChiLan1.0ChiLan1.0
SLC44A5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21151,169,214 - 151,683,783 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11150,329,656 - 150,844,218 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0174,424,615 - 74,831,322 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1176,398,494 - 76,799,674 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl176,402,967 - 76,729,900 (-)Ensemblpanpan1.1panPan2
SLC44A5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1670,955,420 - 71,295,552 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl670,929,413 - 71,285,340 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha673,620,330 - 73,959,054 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0671,548,204 - 71,887,932 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl671,542,624 - 71,876,341 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1671,044,390 - 71,383,323 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0670,989,982 - 71,328,635 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0671,483,386 - 71,823,397 (+)NCBIUU_Cfam_GSD_1.0
Slc44a5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505886,877,365 - 87,218,807 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365712,390,022 - 2,729,026 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365712,388,551 - 2,516,840 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC44A5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6137,682,312 - 138,009,865 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16137,595,296 - 138,009,530 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26127,567,738 - 127,974,051 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC44A5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12057,583,690 - 57,978,406 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2057,908,420 - 57,973,904 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603359,492,986 - 60,040,482 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021255525 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021255526 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021255527 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021255528 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021255529 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021255530 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021255531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021255532 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01020873 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01020874 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01020875 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01020876 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01020877 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01020878 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01020879 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01020880 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01020881 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01020882 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01020883 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01020884 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01020885 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01020886 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01020887 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JH166486 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSHGLT00000011856   ⟹   ENSHGLP00000011728
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462474221,555,828 - 21,610,197 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000011857   ⟹   ENSHGLP00000011729
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462474221,555,828 - 21,610,197 (+)Ensembl
RefSeq Acc Id: XM_021255525   ⟹   XP_021111184
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474221,301,391 - 21,610,174 (+)NCBI
RefSeq Acc Id: XM_021255526   ⟹   XP_021111185
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474221,258,331 - 21,610,174 (+)NCBI
RefSeq Acc Id: XM_021255527   ⟹   XP_021111186
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474221,258,353 - 21,610,174 (+)NCBI
RefSeq Acc Id: XM_021255528   ⟹   XP_021111187
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474221,301,391 - 21,610,172 (+)NCBI
RefSeq Acc Id: XM_021255529   ⟹   XP_021111188
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474221,301,391 - 21,610,174 (+)NCBI
RefSeq Acc Id: XM_021255530   ⟹   XP_021111189
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474221,258,331 - 21,610,174 (+)NCBI
RefSeq Acc Id: XM_021255531   ⟹   XP_021111190
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474221,258,353 - 21,610,174 (+)NCBI
RefSeq Acc Id: XM_021255532   ⟹   XP_021111191
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474221,492,990 - 21,610,173 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_021111185   ⟸   XM_021255526
- Peptide Label: isoform X1
- UniProtKB: G5AQ87 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021111189   ⟸   XM_021255530
- Peptide Label: isoform X3
- UniProtKB: G5AQ87 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021111186   ⟸   XM_021255527
- Peptide Label: isoform X1
- UniProtKB: G5AQ87 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021111190   ⟸   XM_021255531
- Peptide Label: isoform X3
- UniProtKB: G5AQ87 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021111184   ⟸   XM_021255525
- Peptide Label: isoform X1
- UniProtKB: G5AQ87 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021111188   ⟸   XM_021255529
- Peptide Label: isoform X3
- UniProtKB: G5AQ87 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021111187   ⟸   XM_021255528
- Peptide Label: isoform X2
- UniProtKB: G5AQ87 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021111191   ⟸   XM_021255532
- Peptide Label: isoform X4
- UniProtKB: G5AQ87 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000011728   ⟸   ENSHGLT00000011856
RefSeq Acc Id: ENSHGLP00000011729   ⟸   ENSHGLT00000011857


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000008408 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000011856 ENTREZGENE
InterPro Choline_transptr-like UniProtKB/TrEMBL
NCBI Gene Slc44a5 ENTREZGENE
PANTHER CHOLINE TRANSPORTER-LIKE (SLC FAMILY 44) UniProtKB/TrEMBL
  CHOLINE TRANSPORTER-LIKE PROTEIN 5 UniProtKB/TrEMBL
Pfam Choline_transpo UniProtKB/TrEMBL
UniProt G5AQ87 ENTREZGENE, UniProtKB/TrEMBL