Cdc27 (cell division cycle 27) - Rat Genome Database

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Gene: Cdc27 (cell division cycle 27) Heterocephalus glaber
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Symbol: Cdc27
Name: cell division cycle 27
RGD ID: 18936492
Description: ENCODES a protein that exhibits protein phosphatase binding (ortholog); INVOLVED IN metaphase/anaphase transition of mitotic cell cycle (ortholog); neuron projection development (ortholog); protein branched polyubiquitination (ortholog); ASSOCIATED WITH esophageal atresia (ortholog); hepatocellular carcinoma (ortholog); hereditary breast ovarian cancer syndrome (ortholog); FOUND IN centrosome (ortholog); mitotic spindle (ortholog); nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cell division cycle protein 27 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248492,026,425 - 2,092,857 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248492,026,433 - 2,105,626 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Cdc27
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248492,026,425 - 2,092,857 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248492,026,433 - 2,105,626 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
CDC27
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381747,117,703 - 47,189,295 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1747,117,703 - 47,189,422 (-)EnsemblGRCh38hg38GRCh38
GRCh371745,195,069 - 45,266,661 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361742,552,625 - 42,621,664 (-)NCBINCBI36Build 36hg18NCBI36
Build 341742,552,624 - 42,621,664NCBI
Celera1741,645,340 - 41,716,724 (-)NCBICelera
Cytogenetic Map17q21.32NCBI
HuRef1740,572,496 - 40,644,750 (-)NCBIHuRef
CHM1_11745,260,254 - 45,331,607 (-)NCBICHM1_1
T2T-CHM13v2.01747,979,197 - 48,051,640 (-)NCBIT2T-CHM13v2.0
Cdc27
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911104,393,350 - 104,441,371 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11104,393,571 - 104,441,446 (-)EnsemblGRCm39 Ensembl
GRCm3811104,502,524 - 104,550,620 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11104,502,745 - 104,550,620 (-)EnsemblGRCm38mm10GRCm38
MGSCv3711104,363,838 - 104,411,934 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611104,318,606 - 104,376,937 (-)NCBIMGSCv36mm8
Celera11116,230,588 - 116,278,484 (-)NCBICelera
Cytogenetic Map11E1NCBI
cM Map1167.79NCBI
Cdc27
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81089,900,676 - 89,949,770 (-)NCBIGRCr8
mRatBN7.21089,400,720 - 89,449,816 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1089,400,940 - 89,449,736 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1094,440,366 - 94,485,331 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01093,903,884 - 93,948,519 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01089,306,665 - 89,353,815 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01092,551,754 - 92,602,214 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1092,554,081 - 92,602,082 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01092,314,321 - 92,364,553 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41093,678,790 - 93,725,987 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11093,693,161 - 93,740,357 (-)NCBI
Celera1088,097,228 - 88,143,638 (-)NCBICelera
Cytogenetic Map10q32.1NCBI
Cdc27
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554789,927,871 - 10,002,020 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554789,927,871 - 10,002,020 (+)NCBIChiLan1.0ChiLan1.0
CDC27
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21917,825,006 - 17,896,577 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11719,790,590 - 19,860,083 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01710,259,194 - 10,331,011 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11710,473,516 - 10,545,549 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1710,473,646 - 10,545,549 (+)Ensemblpanpan1.1panPan2
CDC27
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.199,281,152 - 9,351,629 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl99,281,196 - 9,348,678 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha910,946,699 - 11,017,232 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0910,870,030 - 10,940,621 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl910,870,065 - 10,940,617 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.199,884,169 - 9,954,826 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0917,569,886 - 17,640,242 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0917,516,367 - 17,586,916 (-)NCBIUU_Cfam_GSD_1.0
Cdc27
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560216,432,450 - 16,493,366 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365412,700,997 - 2,762,147 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365412,700,997 - 2,762,180 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CDC27
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1216,810,910 - 16,882,269 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11216,810,868 - 16,882,271 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21216,834,050 - 16,905,448 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CDC27
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11659,497,731 - 59,564,298 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1659,497,713 - 59,564,480 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607730,209,741 - 30,276,471 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000022664   ⟹   ENSHGLP00000022452
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248492,026,425 - 2,092,857 (+)Ensembl
RefSeq Acc Id: XM_004868646   ⟹   XP_004868703
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248492,026,435 - 2,095,089 (+)NCBI
RefSeq Acc Id: XM_004868647   ⟹   XP_004868704
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248492,026,434 - 2,095,089 (+)NCBI
RefSeq Acc Id: XM_004868648   ⟹   XP_004868705
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248492,026,433 - 2,105,625 (+)NCBI
RefSeq Acc Id: XM_013067059   ⟹   XP_012922513
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248492,042,302 - 2,095,089 (+)NCBI
RefSeq Acc Id: XR_002390553
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248492,026,433 - 2,095,089 (+)NCBI
RefSeq Acc Id: XR_002390554
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248492,026,433 - 2,105,626 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004868703 (Get FASTA)   NCBI Sequence Viewer  
  XP_004868704 (Get FASTA)   NCBI Sequence Viewer  
  XP_004868705 (Get FASTA)   NCBI Sequence Viewer  
  XP_012922513 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000022452
GenBank Protein JAN99570 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_004868705   ⟸   XM_004868648
- Peptide Label: isoform X3
- UniProtKB: G5BMZ4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004868704   ⟸   XM_004868647
- Peptide Label: isoform X2
- UniProtKB: A0A0P6JFV6 (UniProtKB/TrEMBL),   G5BMZ4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004868703   ⟸   XM_004868646
- Peptide Label: isoform X1
- UniProtKB: G5BMZ4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012922513   ⟸   XM_013067059
- Peptide Label: isoform X4
- UniProtKB: G5BMZ4 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000022452   ⟸   ENSHGLT00000022664


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000016008 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000022664 ENTREZGENE
Gene3D-CATH 1.25.40.10 UniProtKB/TrEMBL
InterPro TPR-like_helical_dom_sf UniProtKB/TrEMBL
  TPR_repeat UniProtKB/TrEMBL
NCBI Gene Cdc27 ENTREZGENE
PANTHER CELL DIVISION CYCLE 16,23,27 UniProtKB/TrEMBL
  CELL DIVISION CYCLE PROTEIN 27 HOMOLOG UniProtKB/TrEMBL
Pfam ANAPC3 UniProtKB/TrEMBL
  TPR_1 UniProtKB/TrEMBL
  TPR_8 UniProtKB/TrEMBL
PROSITE TPR UniProtKB/TrEMBL
  TPR_REGION UniProtKB/TrEMBL
SMART TPR UniProtKB/TrEMBL
Superfamily-SCOP SSF48452 UniProtKB/TrEMBL
UniProt A0A0P6JFV6 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6Q7Q8_HETGA UniProtKB/TrEMBL
  A0AAX6Q8V3_HETGA UniProtKB/TrEMBL
  A0AAX6QKR2_HETGA UniProtKB/TrEMBL
  G5BMZ4 ENTREZGENE, UniProtKB/TrEMBL