Prim2 (DNA primase subunit 2) - Rat Genome Database

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Gene: Prim2 (DNA primase subunit 2) Heterocephalus glaber
Analyze
Symbol: Prim2
Name: DNA primase subunit 2
RGD ID: 18936462
Description: ENCODES a protein that exhibits 4 iron, 4 sulfur cluster binding (ortholog); DNA/RNA hybrid binding (ortholog); INVOLVED IN DNA replication initiation (ortholog); DNA replication, synthesis of primer (ortholog); FOUND IN alpha DNA polymerase:primase complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: DNA primase large subunit; primase (DNA) subunit 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475319,014,579 - 19,447,714 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Prim2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475319,014,579 - 19,447,714 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
PRIM2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38657,221,540 - 57,646,850 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl657,314,805 - 57,646,850 (+)EnsemblGRCh38hg38GRCh38
GRCh37657,179,603 - 57,513,376 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36657,290,381 - 57,621,335 (+)NCBINCBI36Build 36hg18NCBI36
Build 34657,290,380 - 57,621,334NCBI
Celera658,845,527 - 58,907,120 (+)NCBICelera
Cytogenetic Map6p11.2NCBI
HuRef521,733,697 - 21,771,156 (-)NCBIHuRef
HuRef657,016,307 - 57,236,736 (+)NCBIHuRef
CHM1_1657,179,974 - 57,645,053 (+)NCBICHM1_1
T2T-CHM13v2.0657,060,566 - 57,485,715 (+)NCBIT2T-CHM13v2.0
Prim2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39133,492,889 - 33,708,867 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl133,492,891 - 33,708,876 (-)EnsemblGRCm39 Ensembl
GRCm38133,453,808 - 33,669,808 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl133,453,810 - 33,669,795 (-)EnsemblGRCm38mm10GRCm38
MGSCv37133,510,656 - 33,726,603 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36133,398,357 - 33,614,304 (-)NCBIMGSCv36mm8
Celera133,228,568 - 33,444,813 (-)NCBICelera
Cytogenetic Map1BNCBI
cM Map112.7NCBI
Prim2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8943,188,350 - 43,400,482 (-)NCBIGRCr8
mRatBN7.2935,692,376 - 35,904,521 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl935,692,376 - 35,903,030 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx944,192,519 - 44,401,401 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0949,320,479 - 49,532,594 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0947,602,394 - 47,814,513 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0938,535,435 - 38,745,058 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl938,536,920 - 38,745,099 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0938,215,946 - 38,424,424 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4932,206,274 - 32,424,970 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1932,207,990 - 32,415,542 (-)NCBI
Celera933,486,356 - 33,697,667 (-)NCBICelera
Cytogenetic Map9q21NCBI
Prim2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555022,647,462 - 2,898,919 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555022,642,328 - 2,898,919 (-)NCBIChiLan1.0ChiLan1.0
PRIM2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2571,692,575 - 72,119,835 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1667,668,942 - 68,000,220 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0656,875,331 - 56,884,118 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1658,503,286 - 58,514,832 (+)NCBIpanpan1.1PanPan1.1panPan2
PRIM2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11224,504,202 - 24,811,942 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1224,504,700 - 24,811,924 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1224,432,446 - 24,739,676 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01225,042,105 - 25,349,960 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1225,042,169 - 25,349,957 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11224,539,462 - 24,846,864 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01224,641,103 - 24,948,387 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01224,772,113 - 25,079,798 (+)NCBIUU_Cfam_GSD_1.0
Prim2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494659,962,253 - 60,223,544 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364763,737,061 - 3,996,910 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364763,736,663 - 3,997,936 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PRIM2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl728,274,627 - 28,631,514 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1728,274,626 - 28,566,633 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2732,750,198 - 33,023,012 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PRIM2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11713,995,488 - 14,304,161 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1713,995,401 - 14,304,156 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605820,315,866 - 20,455,696 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021259193 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01034131 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01034132 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01034133 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01034134 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01034135 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01034136 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01034137 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01034138 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01034139 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01034140 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01034141 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01034142 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01034143 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01034144 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01034145 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01034146 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01034147 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01034148 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01034149 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01034150 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01034151 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01034152 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01034153 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01034154 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01034155 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01034156 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_021259193   ⟹   XP_021114852
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475319,014,579 - 19,447,714 (+)NCBI
Protein Sequences
Protein RefSeqs XP_021114852 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_021114852   ⟸   XM_021259193


Additional Information

Database Acc Id Source(s)
NCBI Gene Prim2 ENTREZGENE