Kcna7 (potassium voltage-gated channel subfamily A member 7) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Kcna7 (potassium voltage-gated channel subfamily A member 7) Heterocephalus glaber
Analyze
Symbol: Kcna7
Name: potassium voltage-gated channel subfamily A member 7
RGD ID: 18936313
Description: ASSOCIATED WITH developmental and epileptic encephalopathy 12 (ortholog); genetic disease (ortholog); progressive familial heart block type IB (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: potassium voltage-gated channel, shaker-related subfamily, member 7
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248324,996,088 - 5,004,041 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248324,996,088 - 5,003,296 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Kcna7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248324,996,088 - 5,004,041 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248324,996,088 - 5,003,296 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
KCNA7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381949,067,397 - 49,072,699 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1949,067,397 - 49,072,699 (-)EnsemblGRCh38hg38GRCh38
GRCh371949,570,654 - 49,575,956 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361954,262,487 - 54,268,010 (-)NCBINCBI36Build 36hg18NCBI36
Build 341954,262,486 - 54,268,010NCBI
Celera1946,437,882 - 46,443,410 (-)NCBICelera
Cytogenetic Map19q13.33NCBI
HuRef1945,947,348 - 45,952,629 (-)NCBIHuRef
CHM1_11949,572,917 - 49,578,434 (-)NCBICHM1_1
T2T-CHM13v2.01952,062,115 - 52,067,422 (-)NCBIT2T-CHM13v2.0
Kcna7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39745,055,384 - 45,060,806 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl745,055,077 - 45,059,187 (+)EnsemblGRCm39 Ensembl
GRCm38745,405,960 - 45,411,382 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl745,405,653 - 45,409,763 (+)EnsemblGRCm38mm10GRCm38
MGSCv37752,661,330 - 52,666,752 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36745,274,002 - 45,279,424 (+)NCBIMGSCv36mm8
Celera740,861,991 - 40,867,413 (+)NCBICelera
Cytogenetic Map7B3NCBI
cM Map729.3NCBI
Kcna7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81105,022,549 - 105,028,041 (+)NCBIGRCr8
mRatBN7.2195,886,073 - 95,891,565 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl195,886,073 - 95,891,565 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1101,271,498 - 101,276,990 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01109,744,175 - 109,749,667 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01103,034,575 - 103,040,067 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01101,397,828 - 101,403,320 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1101,397,828 - 101,403,320 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01102,477,238 - 102,482,730 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4195,878,091 - 95,883,583 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1195,956,715 - 95,959,990 (+)NCBI
Celera190,141,628 - 90,147,120 (+)NCBICelera
Cytogenetic Map1q22NCBI
Kcna7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555591,641,388 - 1,645,546 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555591,641,388 - 1,645,476 (+)NCBIChiLan1.0ChiLan1.0
KCNA7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22055,181,361 - 55,187,032 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11957,100,833 - 57,106,508 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01946,077,423 - 46,083,245 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11955,007,802 - 55,008,985 (-)NCBIpanpan1.1PanPan1.1panPan2
KCNA7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl1107,367,520 - 107,371,415 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1107,367,520 - 107,371,415 (+)NCBICanFam3.1canFam3CanFam3.1
ROS_Cfam_1.01107,892,234 - 107,894,668 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1107,892,249 - 107,894,611 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11107,560,088 - 107,562,522 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01107,206,293 - 107,208,727 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01108,041,905 - 108,044,339 (+)NCBIUU_Cfam_GSD_1.0
Kcna7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934921,403,502 - 21,407,795 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366643,023,607 - 3,026,101 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366643,021,715 - 3,025,993 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KCNA7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl654,278,887 - 54,282,209 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1654,276,596 - 54,283,891 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2650,046,118 - 50,049,628 (+)NCBISscrofa10.2Sscrofa10.2susScr3
KCNA7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1642,287,435 - 42,293,083 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl642,290,085 - 42,292,620 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607322,180,254 - 22,182,941 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_004867202 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01084374 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSHGLT00000010487   ⟹   ENSHGLP00000010372
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248324,996,088 - 5,004,041 (+)Ensembl
RefSeq Acc Id: XM_004867202   ⟹   XP_004867259
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248324,996,088 - 5,003,296 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004867259 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000010372
Reference Protein Sequences
RefSeq Acc Id: XP_004867259   ⟸   XM_004867202
RefSeq Acc Id: ENSHGLP00000010372   ⟸   ENSHGLT00000010487


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000007442 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000010487 ENTREZGENE
NCBI Gene Kcna7 ENTREZGENE