Wnt6 (Wnt family member 6) - Rat Genome Database

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Gene: Wnt6 (Wnt family member 6) Heterocephalus glaber
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Symbol: Wnt6
Name: Wnt family member 6
RGD ID: 18936145
Description: ENCODES a protein that exhibits cytokine activity (inferred); frizzled binding (inferred); signaling receptor binding (inferred); INVOLVED IN axis specification (ortholog); branching involved in ureteric bud morphogenesis (ortholog); epithelial-mesenchymal cell signaling (ortholog); PARTICIPATES IN Wnt signaling pathway; Wnt signaling, canonical pathway; ASSOCIATED WITH alacrima, achalasia, and impaired intellectual development syndrome (ortholog); Animal Mammary Neoplasms (ortholog); bladder exstrophy-epispadias-cloacal exstrophy complex (ortholog); FOUND IN cell surface (ortholog); extracellular matrix (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Protein Wnt-6
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248236,145,545 - 6,150,181 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248236,145,836 - 6,150,133 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Wnt6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248236,145,545 - 6,150,181 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248236,145,836 - 6,150,133 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
WNT6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382218,859,805 - 218,874,233 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2218,859,805 - 218,874,233 (+)EnsemblGRCh38hg38GRCh38
GRCh372219,724,528 - 219,738,955 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362219,432,790 - 219,447,198 (+)NCBINCBI36Build 36hg18NCBI36
Build 342219,550,050 - 219,564,459NCBI
Celera2213,494,308 - 213,508,717 (+)NCBICelera
Cytogenetic Map2q35NCBI
HuRef2211,579,073 - 211,593,483 (+)NCBIHuRef
CHM1_12219,731,923 - 219,746,333 (+)NCBICHM1_1
T2T-CHM13v2.02219,348,208 - 219,362,636 (+)NCBIT2T-CHM13v2.0
Wnt6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39174,793,499 - 74,824,481 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl174,811,051 - 74,824,481 (+)EnsemblGRCm39 Ensembl
GRCm38174,754,342 - 74,785,322 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl174,771,892 - 74,785,322 (+)EnsemblGRCm38mm10GRCm38
MGSCv37174,818,466 - 74,831,893 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36174,705,165 - 74,718,155 (+)NCBIMGSCv36mm8
Celera175,326,979 - 75,340,389 (+)NCBICelera
Cytogenetic Map1C4NCBI
cM Map138.54NCBI
Wnt6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8983,778,552 - 83,792,186 (+)NCBIGRCr8
mRatBN7.2976,329,882 - 76,343,523 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl976,329,882 - 76,343,523 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx984,775,108 - 84,788,700 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0989,904,052 - 89,917,640 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0988,290,221 - 88,303,815 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0982,033,543 - 82,047,172 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl982,033,543 - 82,047,166 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0981,796,069 - 81,809,700 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4974,104,364 - 74,117,995 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1974,260,929 - 74,264,251 (+)NCBI
Celera973,902,364 - 73,915,999 (+)NCBICelera
Cytogenetic Map9q33NCBI
Wnt6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545314,545,700 - 14,560,976 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545314,547,427 - 14,560,001 (-)NCBIChiLan1.0ChiLan1.0
WNT6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213121,492,605 - 121,507,593 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B121,507,573 - 121,522,558 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B106,119,740 - 106,134,317 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B224,714,217 - 224,728,557 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B224,714,229 - 224,728,171 (+)Ensemblpanpan1.1panPan2
WNT6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13725,452,875 - 25,457,437 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3725,453,905 - 25,456,654 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3726,264,174 - 26,277,672 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03725,459,418 - 25,472,890 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3725,459,276 - 25,472,463 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13725,364,055 - 25,377,524 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03725,298,852 - 25,312,297 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03725,319,631 - 25,333,316 (+)NCBIUU_Cfam_GSD_1.0
Wnt6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303174,947,277 - 174,959,904 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365691,290,052 - 1,302,691 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365691,290,061 - 1,302,672 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
WNT6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15120,901,376 - 120,917,486 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115120,901,471 - 120,917,359 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
WNT6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.110104,759,794 - 104,775,642 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl10104,760,045 - 104,774,487 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604094,626,733 - 94,641,426 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


RefSeq Acc Id: ENSHGLT00000011882   ⟹   ENSHGLP00000011754
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248236,145,545 - 6,150,181 (-)Ensembl
RefSeq Acc Id: XM_013065464   ⟹   XP_012920918
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248236,145,836 - 6,150,133 (-)NCBI
Protein Sequences
Protein RefSeqs XP_012920918 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHA97574 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000011754
GenBank Protein JAO02135 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_012920918   ⟸   XM_013065464
- UniProtKB: A0A0P6JDQ5 (UniProtKB/TrEMBL),   G5AKL4 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000011754   ⟸   ENSHGLT00000011882


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000008425 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000011882 ENTREZGENE
Gene3D-CATH 3.30.2460.20 UniProtKB/TrEMBL
InterPro Wnt UniProtKB/TrEMBL
  Wnt6 UniProtKB/TrEMBL
  Wnt_C UniProtKB/TrEMBL
  Wnt_CS UniProtKB/TrEMBL
KEGG Report hgl:101698823 UniProtKB/TrEMBL
NCBI Gene Wnt6 ENTREZGENE
PANTHER PROTEIN WNT-6 UniProtKB/TrEMBL
  PTHR12027 UniProtKB/TrEMBL
Pfam wnt UniProtKB/TrEMBL
PRINTS WNT6PROTEIN UniProtKB/TrEMBL
  WNTPROTEIN UniProtKB/TrEMBL
PROSITE WNT1 UniProtKB/TrEMBL
SMART WNT1 UniProtKB/TrEMBL
UniProt A0A0P6JDQ5 ENTREZGENE, UniProtKB/TrEMBL
  G5AKL4 ENTREZGENE, UniProtKB/TrEMBL