Fbxl17 (F-box and leucine rich repeat protein 17) - Rat Genome Database

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Gene: Fbxl17 (F-box and leucine rich repeat protein 17) Heterocephalus glaber
Analyze
Symbol: Fbxl17
Name: F-box and leucine rich repeat protein 17
RGD ID: 18936113
Description: INVOLVED IN proteasome-mediated ubiquitin-dependent protein catabolic process (ortholog); protein polyubiquitination (ortholog); protein quality control for misfolded or incompletely synthesized proteins (ortholog); ASSOCIATED WITH familial adenomatous polyposis 1 (ortholog); genetic disease (ortholog); Hereditary Neoplastic Syndromes (ortholog); FOUND IN cytoplasm (ortholog); nucleoplasm (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: F-box/LRR-repeat protein 17
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474325,789,733 - 26,278,728 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474325,787,012 - 26,278,813 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Fbxl17
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474325,789,733 - 26,278,728 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474325,787,012 - 26,278,813 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
FBXL17
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385107,859,035 - 108,382,098 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5107,859,035 - 108,382,098 (-)EnsemblGRCh38hg38GRCh38
GRCh375107,194,736 - 107,717,799 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365107,223,348 - 107,745,010 (-)NCBINCBI36Build 36hg18NCBI36
Build 345107,223,347 - 107,745,010NCBI
Celera5103,134,100 - 103,657,168 (-)NCBICelera
Cytogenetic Map5q21.3NCBI
HuRef5102,367,723 - 102,891,227 (-)NCBIHuRef
CHM1_15106,627,699 - 107,150,816 (-)NCBICHM1_1
T2T-CHM13v2.05108,361,407 - 108,884,649 (-)NCBIT2T-CHM13v2.0
Fbxl17
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391763,352,944 - 63,811,179 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1763,364,447 - 63,807,012 (-)EnsemblGRCm39 Ensembl
GRCm381763,045,949 - 63,504,184 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1763,057,452 - 63,500,017 (-)EnsemblGRCm38mm10GRCm38
MGSCv371763,395,298 - 63,849,929 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361762,744,243 - 63,185,832 (-)NCBIMGSCv36mm8
Celera1767,384,032 - 67,829,008 (-)NCBICelera
Cytogenetic Map17E1.1NCBI
cM Map1732.68NCBI
Fbxl17
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr89110,227,609 - 110,666,184 (-)NCBIGRCr8
mRatBN7.29102,780,573 - 103,206,978 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl9102,782,440 - 103,208,950 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx9111,191,233 - 111,618,997 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.09116,306,246 - 116,732,627 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.09114,657,122 - 115,084,885 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.09110,515,558 - 110,936,631 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl9110,515,558 - 110,936,631 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.09110,083,430 - 110,502,017 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.49101,738,348 - 102,184,610 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.19101,948,584 - 102,394,061 (-)NCBI
Celera9100,202,098 - 100,622,483 (-)NCBICelera
Cytogenetic Map9q37NCBI
Fbxl17
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554186,314,503 - 6,758,531 (+)NCBIChiLan1.0ChiLan1.0
FBXL17
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24103,138,730 - 103,664,084 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15101,292,380 - 101,817,735 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05103,214,110 - 103,739,494 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15109,029,350 - 109,553,578 (-)NCBIpanpan1.1PanPan1.1panPan2
FBXL17
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.133,602,105 - 4,086,182 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl33,618,236 - 4,083,554 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha34,993,550 - 5,489,709 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.033,481,947 - 3,985,827 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl33,481,784 - 3,983,327 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.133,429,134 - 3,925,437 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.033,457,236 - 3,953,823 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.033,600,496 - 4,097,421 (+)NCBIUU_Cfam_GSD_1.0
Fbxl17
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213158,432,180 - 158,937,184 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365312,674,319 - 3,179,325 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FBXL17
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2112,989,145 - 113,480,210 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12112,989,134 - 113,480,564 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22117,402,955 - 117,936,679 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FBXL17
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12311,307,953 - 11,839,483 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2311,634,770 - 11,839,734 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660362,400,814 - 2,946,625 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_004841762 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021255850 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01022159 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01022160 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01022161 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01022162 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01022163 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01022164 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01022165 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01022166 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01022167 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01022168 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01022169 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01022170 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01022171 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01022172 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01022173 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01022174 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01022175 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JH171348 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSHGLT00000006241   ⟹   ENSHGLP00000006166
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462474325,789,733 - 26,278,728 (-)Ensembl
RefSeq Acc Id: XM_004841762   ⟹   XP_004841819
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474325,787,012 - 26,278,813 (-)NCBI
RefSeq Acc Id: XM_021255850   ⟹   XP_021111509
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474325,787,012 - 26,278,813 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004841819 (Get FASTA)   NCBI Sequence Viewer  
  XP_021111509 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB11527 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000006166
Reference Protein Sequences
RefSeq Acc Id: XP_004841819   ⟸   XM_004841762
- Peptide Label: isoform X2
RefSeq Acc Id: XP_021111509   ⟸   XM_021255850
- Peptide Label: isoform X1
RefSeq Acc Id: ENSHGLP00000006166   ⟸   ENSHGLT00000006241


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000004504 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000006241 ENTREZGENE
NCBI Gene Fbxl17 ENTREZGENE