Cds2 (CDP-diacylglycerol synthase 2) - Rat Genome Database

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Gene: Cds2 (CDP-diacylglycerol synthase 2) Heterocephalus glaber
Analyze
Symbol: Cds2
Name: CDP-diacylglycerol synthase 2
RGD ID: 18935994
Description: ENCODES a protein that exhibits nucleotidyltransferase activity (inferred); phosphatidate cytidylyltransferase activity (inferred); INVOLVED IN CDP-diacylglycerol biosynthetic process (inferred); lipid droplet formation (inferred); phospholipid biosynthetic process (inferred); ASSOCIATED WITH genetic disease (ortholog); Huntington's disease-like 1 (ortholog); pantothenate kinase-associated neurodegeneration (ortholog); FOUND IN endoplasmic reticulum (inferred); endoplasmic reticulum membrane (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Phosphatidate cytidylyltransferase 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247416,159,573 - 6,227,419 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247416,159,561 - 6,231,967 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Cds2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247416,159,573 - 6,227,419 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247416,159,561 - 6,231,967 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
CDS2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38205,127,008 - 5,197,887 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl205,126,879 - 5,197,887 (+)EnsemblGRCh38hg38GRCh38
GRCh37205,107,654 - 5,178,533 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36205,055,482 - 5,119,989 (+)NCBINCBI36Build 36hg18NCBI36
Build 34205,055,481 - 5,119,987NCBI
Celera205,177,503 - 5,242,010 (+)NCBICelera
Cytogenetic Map20p12.3NCBI
HuRef205,061,336 - 5,132,462 (+)NCBIHuRef
CHM1_1205,108,785 - 5,179,904 (+)NCBICHM1_1
T2T-CHM13v2.0205,166,426 - 5,237,294 (+)NCBIT2T-CHM13v2.0
Cds2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392132,105,068 - 132,153,970 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2132,105,068 - 132,153,970 (+)EnsemblGRCm39 Ensembl
GRCm382132,253,338 - 132,312,050 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2132,263,148 - 132,312,050 (+)EnsemblGRCm38mm10GRCm38
MGSCv372132,088,993 - 132,137,777 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362131,954,698 - 132,003,482 (+)NCBIMGSCv36mm8
Celera2133,486,542 - 133,537,001 (+)NCBICelera
Cytogenetic Map2F2NCBI
cM Map264.15NCBI
Cds2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83139,967,870 - 140,006,459 (+)NCBIGRCr8
mRatBN7.23119,514,963 - 119,553,555 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3119,515,000 - 119,553,541 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3123,418,698 - 123,457,545 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03132,005,897 - 132,044,962 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03129,674,802 - 129,713,654 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03124,896,657 - 124,935,221 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3124,896,618 - 124,935,226 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03131,392,178 - 131,430,664 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43120,025,455 - 120,063,992 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13119,931,027 - 119,969,565 (+)NCBI
Celera3118,312,509 - 118,351,088 (+)NCBICelera
Cytogenetic Map3q36NCBI
Cds2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541515,792,239 - 15,806,454 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541515,762,672 - 15,806,454 (+)NCBIChiLan1.0ChiLan1.0
CDS2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2216,074,468 - 6,145,700 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1206,071,352 - 6,142,524 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0205,146,754 - 5,218,051 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1204,939,578 - 5,010,579 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl204,939,578 - 5,002,977 (+)Ensemblpanpan1.1panPan2
CDS2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12416,407,869 - 16,469,855 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2416,414,682 - 16,469,759 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2416,230,679 - 16,292,397 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02416,821,119 - 16,882,867 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2416,823,103 - 16,883,125 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12416,418,163 - 16,479,905 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02416,531,923 - 16,586,955 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02416,858,620 - 16,920,606 (-)NCBIUU_Cfam_GSD_1.0
Cds2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640165,253,245 - 165,322,981 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648513,691,724 - 13,754,397 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648513,684,609 - 13,754,357 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CDS2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1714,151,597 - 14,220,839 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11714,151,810 - 14,220,841 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21715,142,037 - 15,203,537 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CDS2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1232,867,065 - 32,936,456 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl232,874,699 - 32,935,813 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607111,598,389 - 11,668,060 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000023050   ⟹   ENSHGLP00000022836
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247416,159,573 - 6,227,419 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000023051   ⟹   ENSHGLP00000022837
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247416,212,042 - 6,227,419 (+)Ensembl
RefSeq Acc Id: XM_004840781   ⟹   XP_004840838
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247416,159,561 - 6,231,967 (+)NCBI
RefSeq Acc Id: XM_004840782   ⟹   XP_004840839
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247416,212,439 - 6,231,967 (+)NCBI
RefSeq Acc Id: XM_021255022   ⟹   XP_021110681
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247416,160,160 - 6,231,967 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004840838 (Get FASTA)   NCBI Sequence Viewer  
  XP_004840839 (Get FASTA)   NCBI Sequence Viewer  
  XP_021110681 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB04323 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000022836
  ENSHGLP00000022837
  ENSHGLP00100009667
GenBank Protein JAN97827 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_004840838   ⟸   XM_004840781
- Peptide Label: isoform X1
- UniProtKB: G5B4W2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021110681   ⟸   XM_021255022
- Peptide Label: isoform X2
RefSeq Acc Id: XP_004840839   ⟸   XM_004840782
- Peptide Label: isoform X3
RefSeq Acc Id: ENSHGLP00000022836   ⟸   ENSHGLT00000023050
RefSeq Acc Id: ENSHGLP00000022837   ⟸   ENSHGLT00000023051


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000016290 Ensembl, ENTREZGENE
  ENSHGLG00100007170 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000023050 ENTREZGENE
  ENSHGLT00000023051 ENTREZGENE
  ENSHGLT00100009778 UniProtKB/TrEMBL
InterPro PC_trans UniProtKB/TrEMBL
  PC_Trfase_euk UniProtKB/TrEMBL
KEGG Report hgl:101714337 UniProtKB/TrEMBL
NCBI Gene Cds2 ENTREZGENE
PANTHER PHOSPHATIDATE CYTIDYLYLTRANSFERASE 2 UniProtKB/TrEMBL
  PTHR13773 UniProtKB/TrEMBL
Pfam CTP_transf_1 UniProtKB/TrEMBL
PIRSF PC_trans_euk UniProtKB/TrEMBL
PROSITE CDS UniProtKB/TrEMBL
UniProt G5B4W2 ENTREZGENE, UniProtKB/TrEMBL