Ska3 (spindle and kinetochore associated complex subunit 3) - Rat Genome Database

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Gene: Ska3 (spindle and kinetochore associated complex subunit 3) Heterocephalus glaber
Analyze
Symbol: Ska3
Name: spindle and kinetochore associated complex subunit 3
RGD ID: 18935773
Description: ENCODES a protein that exhibits microtubule binding (ortholog); INVOLVED IN attachment of mitotic spindle microtubules to kinetochore (ortholog); establishment of meiotic spindle orientation (ortholog); metaphase chromosome alignment (ortholog); ASSOCIATED WITH hepatocellular carcinoma (ortholog); FOUND IN centrosome (ortholog); cytosol (ortholog); meiotic spindle (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: spindle and kinetochore-associated protein 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477616,413,048 - 16,445,892 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477616,412,683 - 16,450,784 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Ska3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477616,413,048 - 16,445,892 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477616,412,683 - 16,450,784 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
SKA3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381321,153,595 - 21,176,552 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1321,153,595 - 21,176,552 (-)EnsemblGRCh38hg38GRCh38
GRCh371321,727,734 - 21,750,691 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361320,625,734 - 20,648,710 (-)NCBINCBI36Build 36hg18NCBI36
Build 341320,625,734 - 20,648,710NCBI
Celera132,789,717 - 2,812,399 (-)NCBICelera
Cytogenetic Map13q12.11NCBI
HuRef132,529,177 - 2,551,862 (-)NCBIHuRef
CHM1_11321,695,750 - 21,718,428 (-)NCBICHM1_1
T2T-CHM13v2.01320,346,668 - 20,369,632 (-)NCBIT2T-CHM13v2.0
Ska3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391458,044,016 - 58,063,748 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1458,044,018 - 58,063,642 (-)EnsemblGRCm39 Ensembl
GRCm381457,806,558 - 57,826,291 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1457,806,561 - 57,826,185 (-)EnsemblGRCm38mm10GRCm38
MGSCv371458,425,398 - 58,445,000 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361456,760,671 - 56,780,273 (-)NCBIMGSCv36mm8
Celera1455,603,097 - 55,622,698 (-)NCBICelera
Cytogenetic Map14C3NCBI
cM Map1430.51NCBI
Ska3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81536,067,372 - 36,086,563 (-)NCBIGRCr8
mRatBN7.21531,951,812 - 31,971,010 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1531,951,825 - 31,971,010 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1533,944,005 - 33,962,337 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01535,094,675 - 35,113,007 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01533,352,759 - 33,371,092 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01538,077,903 - 38,097,100 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1538,077,909 - 38,096,875 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01541,918,694 - 41,937,891 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41536,848,694 - 36,867,026 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11536,864,972 - 36,877,317 (-)NCBI
Celera1531,663,336 - 31,681,669 (-)NCBICelera
Cytogenetic Map15p12NCBI
Ska3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554971,875,695 - 1,896,587 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554971,874,911 - 1,896,588 (-)NCBIChiLan1.0ChiLan1.0
SKA3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21420,784,341 - 20,818,841 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11311,897,684 - 11,925,841 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0132,481,513 - 2,503,849 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11320,790,236 - 20,812,638 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1320,790,516 - 20,812,554 (-)Ensemblpanpan1.1panPan2
SKA3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12516,982,174 - 17,011,496 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2516,981,931 - 17,001,803 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2517,078,828 - 17,108,137 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02517,118,457 - 17,147,871 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2517,118,211 - 17,138,178 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12516,993,044 - 17,022,404 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02517,004,451 - 17,033,873 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02517,060,592 - 17,089,963 (+)NCBIUU_Cfam_GSD_1.0
Ska3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945119,039,152 - 119,062,514 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936720586,850 - 605,406 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936720586,730 - 610,397 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SKA3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl111,302,886 - 1,320,981 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1111,302,880 - 1,321,132 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.211439,296 - 450,351 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SKA3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1332,645 - 57,771 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605744,559,055 - 44,584,244 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000009636   ⟹   ENSHGLP00000009529
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462477616,413,048 - 16,445,892 (+)Ensembl
RefSeq Acc Id: XM_004921126   ⟹   XP_004921183
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462477616,412,683 - 16,450,783 (+)NCBI
RefSeq Acc Id: XM_021236367   ⟹   XP_021092026
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462477616,412,683 - 16,450,784 (+)NCBI
RefSeq Acc Id: XM_021236368   ⟹   XP_021092027
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462477616,412,683 - 16,450,784 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004921183 (Get FASTA)   NCBI Sequence Viewer  
  XP_021092026 (Get FASTA)   NCBI Sequence Viewer  
  XP_021092027 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_021092027   ⟸   XM_021236368
- Peptide Label: isoform X3
- UniProtKB: A0AAX6R621 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021092026   ⟸   XM_021236367
- Peptide Label: isoform X2
- UniProtKB: A0AAX6R556 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004921183   ⟸   XM_004921126
- Peptide Label: isoform X1
- UniProtKB: A0AAX6QJP4 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000009529   ⟸   ENSHGLT00000009636


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000006835 Ensembl
Gene3D-CATH 6.10.250.1400 UniProtKB/TrEMBL
InterPro SKA3 UniProtKB/TrEMBL
NCBI Gene Ska3 ENTREZGENE
PANTHER SPINDLE AND KINETOCHORE-ASSOCIATED PROTEIN 3 UniProtKB/TrEMBL
  SPINDLE AND KINETOCHORE-ASSOCIATED PROTEIN 3 UniProtKB/TrEMBL
UniProt A0AAX6QJP4 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6R556 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6R621 ENTREZGENE, UniProtKB/TrEMBL