Hlx (H2.0 like homeobox) - Rat Genome Database

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Gene: Hlx (H2.0 like homeobox) Heterocephalus glaber
Analyze
Symbol: Hlx
Name: H2.0 like homeobox
RGD ID: 18935753
Description: ENCODES a protein that exhibits sequence-specific DNA binding (ortholog); INVOLVED IN animal organ development (ortholog); cell population proliferation (ortholog); embryonic digestive tract morphogenesis (ortholog); PARTICIPATES IN interleukin-12 signaling pathway; ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); genetic disease (ortholog); Loeys-Dietz syndrome 4 (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: H2.0-like homeobox protein
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248354,223,511 - 4,227,979 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248354,223,252 - 4,227,892 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Hlx
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248354,223,511 - 4,227,979 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248354,223,252 - 4,227,892 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
HLX
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381220,879,443 - 220,885,059 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1220,879,431 - 220,885,059 (+)EnsemblGRCh38hg38GRCh38
GRCh371221,052,785 - 221,058,401 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361219,119,382 - 219,125,018 (+)NCBINCBI36Build 36hg18NCBI36
Build 341217,441,153 - 217,446,790NCBI
Celera1194,272,144 - 194,277,780 (+)NCBICelera
Cytogenetic Map1q41NCBI
HuRef1191,727,277 - 191,732,908 (+)NCBIHuRef
CHM1_11222,325,244 - 222,330,902 (+)NCBICHM1_1
T2T-CHM13v2.01220,119,233 - 220,124,841 (+)NCBIT2T-CHM13v2.0
Hlx
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391184,459,340 - 184,464,690 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1184,459,337 - 184,464,816 (-)EnsemblGRCm39 Ensembl
GRCm381184,727,143 - 184,732,493 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1184,727,140 - 184,732,619 (-)EnsemblGRCm38mm10GRCm38
MGSCv371186,551,022 - 186,556,372 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361186,427,931 - 186,433,396 (-)NCBIMGSCv36mm8
Celera1191,689,162 - 191,694,499 (-)NCBICelera
Cytogenetic Map1H5NCBI
cM Map188.97NCBI
Hlx
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81398,811,852 - 98,817,264 (-)NCBIGRCr8
mRatBN7.21396,280,335 - 96,285,750 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1396,280,339 - 96,285,750 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1398,789,496 - 98,794,915 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.013100,185,399 - 100,190,810 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01397,371,712 - 97,377,126 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.013102,637,967 - 102,643,376 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl13102,637,769 - 102,643,223 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.013107,315,400 - 107,320,809 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.413100,685,757 - 100,691,658 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.113100,874,799 - 100,902,762 (-)NCBI
Celera1395,800,154 - 95,805,549 (-)NCBICelera
Cytogenetic Map13q26NCBI
Hlx
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555202,936,815 - 2,941,170 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555202,937,131 - 2,941,170 (-)NCBIChiLan1.0ChiLan1.0
HLX
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2128,514,751 - 28,520,850 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1128,476,536 - 28,482,651 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01196,465,704 - 196,471,803 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11201,500,470 - 201,506,222 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1201,500,470 - 201,506,222 (+)Ensemblpanpan1.1panPan2
HLX
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13815,538,744 - 15,543,686 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3815,539,029 - 15,542,152 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3815,580,303 - 15,585,398 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03815,575,409 - 15,580,508 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3815,575,655 - 15,580,859 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13815,582,466 - 15,587,573 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03815,937,032 - 15,942,341 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03816,230,020 - 16,235,130 (+)NCBIUU_Cfam_GSD_1.0
Hlx
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934456,168,597 - 56,175,226 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366501,416,812 - 1,422,588 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366501,416,825 - 1,422,595 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HLX
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1010,264,244 - 10,269,879 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11010,263,441 - 10,269,882 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21012,516,070 - 12,519,020 (-)NCBISscrofa10.2Sscrofa10.2susScr3
HLX
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1258,641,386 - 8,647,485 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl258,641,752 - 8,646,563 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660558,920,798 - 8,926,903 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_004867412 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01085227 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSHGLT00000027684   ⟹   ENSHGLP00000027442
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248354,223,511 - 4,227,979 (+)Ensembl
RefSeq Acc Id: XM_004867412   ⟹   XP_004867469
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248354,223,252 - 4,227,892 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004867469 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000027442
Reference Protein Sequences
RefSeq Acc Id: XP_004867469   ⟸   XM_004867412
RefSeq Acc Id: ENSHGLP00000027442   ⟸   ENSHGLT00000027684


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000019515 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000027684 ENTREZGENE
NCBI Gene Hlx ENTREZGENE