Vwa3b (von Willebrand factor A domain containing 3B) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Vwa3b (von Willebrand factor A domain containing 3B) Heterocephalus glaber
Analyze
Symbol: Vwa3b
Name: von Willebrand factor A domain containing 3B
RGD ID: 18935647
Description: ASSOCIATED WITH autosomal recessive spinocerebellar ataxia 22 (ortholog); Spinocerebellar Ataxias (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: von Willebrand factor A domain-containing protein 3B
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247493,204,463 - 3,421,806 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247493,106,165 - 3,421,679 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytosol  (ISO)
nucleoplasm  (ISO)

References

Genomics

Comparative Map Data
Vwa3b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247493,204,463 - 3,421,806 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247493,106,165 - 3,421,679 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
VWA3B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38298,087,167 - 98,330,616 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl298,087,116 - 98,313,299 (+)EnsemblGRCh38hg38GRCh38
GRCh37298,703,630 - 98,929,762 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36298,070,027 - 98,295,842 (+)NCBINCBI36Build 36hg18NCBI36
Celera292,907,511 - 93,133,132 (+)NCBICelera
Cytogenetic Map2q11.2NCBI
HuRef292,468,832 - 92,694,531 (+)NCBIHuRef
CHM1_1298,707,922 - 98,933,729 (+)NCBICHM1_1
T2T-CHM13v2.0298,545,383 - 98,788,821 (+)NCBIT2T-CHM13v2.0
Vwa3b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39137,068,372 - 37,226,689 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl137,065,677 - 37,226,694 (+)EnsemblGRCm39 Ensembl
GRCm38137,029,158 - 37,187,608 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl137,026,596 - 37,187,613 (+)EnsemblGRCm38mm10GRCm38
MGSCv37137,086,149 - 37,244,122 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36137,098,390 - 37,132,150 (+)NCBIMGSCv36mm8
Celera136,804,738 - 36,965,147 (+)NCBICelera
Cytogenetic Map1BNCBI
cM Map115.46NCBI
Vwa3b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8946,746,307 - 46,915,436 (+)NCBIGRCr8
mRatBN7.2939,249,523 - 39,419,614 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl939,250,430 - 39,419,611 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0943,607,066 - 43,779,466 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl943,607,669 - 43,779,463 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0943,253,497 - 43,425,216 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4935,962,036 - 36,125,741 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera937,007,813 - 37,176,976 (+)NCBICelera
Cytogenetic Map9q21NCBI
Vwa3b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554704,658,197 - 4,850,336 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554704,658,088 - 4,850,277 (+)NCBIChiLan1.0ChiLan1.0
VWA3B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21230,127,506 - 30,354,109 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A30,130,268 - 30,356,891 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A100,995,476 - 101,221,328 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A99,001,077 - 99,226,175 (+)NCBIpanpan1.1PanPan1.1panPan2
VWA3B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11044,279,047 - 44,508,129 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1044,305,262 - 44,508,139 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1044,201,547 - 44,430,816 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01045,152,236 - 45,381,567 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1045,178,428 - 45,381,569 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11044,862,497 - 45,091,710 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01045,153,560 - 45,383,065 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01045,329,205 - 45,558,780 (-)NCBIUU_Cfam_GSD_1.0
Vwa3b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629284,027,440 - 84,213,494 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049367441,280,438 - 1,466,425 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
VWA3B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl355,950,591 - 56,171,718 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1355,949,534 - 56,173,597 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2358,552,120 - 58,716,317 (-)NCBISscrofa10.2Sscrofa10.2susScr3
VWA3B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1141,804,752 - 2,039,785 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl141,812,852 - 1,985,116 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041169,297,543 - 169,559,074 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021257937 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01028974 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01028975 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01028976 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01028977 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01028978 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01028979 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01028980 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01028981 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01028982 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01028983 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01028984 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01028985 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01028986 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01028987 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01028988 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GEBF01005240 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSHGLT00000010861   ⟹   ENSHGLP00000010739
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247493,204,463 - 3,421,806 (+)Ensembl
RefSeq Acc Id: XM_021257937   ⟹   XP_021113596
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247493,106,165 - 3,421,679 (+)NCBI
Protein Sequences
Protein RefSeqs XP_021113596 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000010739
GenBank Protein JAN98392 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_021113596   ⟸   XM_021257937
- UniProtKB: A0A0P6K2C8 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000010739   ⟸   ENSHGLT00000010861


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000007703 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000010861 ENTREZGENE
Gene3D-CATH 3.40.50.410 UniProtKB/TrEMBL
InterPro DUF4537 UniProtKB/TrEMBL
  VWF_A UniProtKB/TrEMBL
  vWFA_dom_sf UniProtKB/TrEMBL
NCBI Gene Vwa3b ENTREZGENE
PANTHER VON WILLEBRAND FACTOR A DOMAIN-CONTAINING PROTEIN 3B UniProtKB/TrEMBL
  VON WILLEBRAND FACTOR A DOMAIN-CONTAINING PROTEIN 3B UniProtKB/TrEMBL
Pfam DUF4537 UniProtKB/TrEMBL
  VWA_3 UniProtKB/TrEMBL
PROSITE VWFA UniProtKB/TrEMBL
SMART VWA UniProtKB/TrEMBL
Superfamily-SCOP SSF53300 UniProtKB/TrEMBL
UniProt A0A0P6K2C8 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6SV10_HETGA UniProtKB/TrEMBL