Ppp1r13b (protein phosphatase 1 regulatory subunit 13B) - Rat Genome Database

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Gene: Ppp1r13b (protein phosphatase 1 regulatory subunit 13B) Heterocephalus glaber
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Symbol: Ppp1r13b
Name: protein phosphatase 1 regulatory subunit 13B
RGD ID: 18935513
Description: ENCODES a protein that exhibits p53 binding (inferred); INVOLVED IN intrinsic apoptotic signaling pathway by p53 class mediator (ortholog); positive regulation of cellular process (ortholog); PARTICIPATES IN p53 signaling pathway; ASSOCIATED WITH Charcot-Marie-Tooth disease axonal type 2O (ortholog); Childhood Schizophrenia (ortholog); genetic disease (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog); perinuclear region of cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: apoptosis-stimulating of p53 protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247341,121,908 - 1,205,736 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247341,121,966 - 1,205,654 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Ppp1r13b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247341,121,908 - 1,205,736 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247341,121,966 - 1,205,654 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
PPP1R13B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3814103,733,195 - 103,848,814 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl14103,733,195 - 103,847,575 (-)EnsemblGRCh38hg38GRCh38
GRCh3714104,199,532 - 104,313,912 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3614103,269,841 - 103,383,680 (-)NCBINCBI36Build 36hg18NCBI36
Build 3414103,269,841 - 103,383,555NCBI
Celera1484,254,345 - 84,368,187 (-)NCBICelera
Cytogenetic Map14q32.33NCBI
HuRef1484,378,399 - 84,492,781 (-)NCBIHuRef
CHM1_114104,138,256 - 104,252,095 (-)NCBICHM1_1
T2T-CHM13v2.01497,969,263 - 98,085,448 (-)NCBIT2T-CHM13v2.0
Ppp1r13b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3912111,794,892 - 111,874,549 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl12111,794,891 - 111,874,544 (-)EnsemblGRCm39 Ensembl
GRCm3812111,828,457 - 111,908,119 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl12111,828,457 - 111,908,110 (-)EnsemblGRCm38mm10GRCm38
MGSCv3712113,066,669 - 113,146,266 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3612112,276,266 - 112,355,863 (-)NCBIMGSCv36mm8
Celera12113,037,250 - 113,117,966 (-)NCBICelera
Cytogenetic Map12F1NCBI
cM Map1261.14NCBI
Ppp1r13b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86136,711,834 - 136,785,068 (-)NCBIGRCr8
mRatBN7.26130,890,682 - 130,963,845 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6130,890,679 - 130,963,330 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx6131,064,056 - 131,136,375 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06131,361,027 - 131,433,346 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06130,720,717 - 130,793,062 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.06136,397,658 - 136,469,757 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6136,398,518 - 136,436,818 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06145,405,635 - 145,472,047 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46136,620,379 - 136,659,341 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.16136,627,623 - 136,665,529 (-)NCBI
Celera6128,444,524 - 128,483,486 (-)NCBICelera
Cytogenetic Map6q32NCBI
Ppp1r13b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555382,519,765 - 2,594,754 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555382,519,765 - 2,594,769 (-)NCBIChiLan1.0ChiLan1.0
PPP1R13B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v215104,892,934 - 105,008,174 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan114104,109,435 - 104,224,685 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01484,359,917 - 84,474,892 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.114104,168,873 - 104,283,500 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl14104,168,873 - 104,232,974 (-)Ensemblpanpan1.1panPan2
PPP1R13B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1871,462,338 - 71,518,918 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl871,463,270 - 71,553,692 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha870,975,462 - 71,064,278 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0871,741,097 - 71,830,283 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl871,742,027 - 71,831,295 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1871,430,044 - 71,519,088 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0871,470,469 - 71,559,274 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0871,869,071 - 71,957,890 (-)NCBIUU_Cfam_GSD_1.0
Ppp1r13b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244086402,521,342 - 2,618,419 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366211,383,105 - 1,447,353 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366211,383,137 - 1,447,376 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PPP1R13B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa10.27130,799,648 - 130,821,151 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PPP1R13B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12481,663,105 - 81,780,783 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2481,664,508 - 81,779,390 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605368,976,678 - 69,100,388 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


RefSeq Acc Id: ENSHGLT00000009533   ⟹   ENSHGLP00000009428
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247341,121,908 - 1,205,736 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000009534   ⟹   ENSHGLP00000009429
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247341,121,908 - 1,205,654 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000009535   ⟹   ENSHGLP00000009430
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247341,137,497 - 1,205,736 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000009536   ⟹   ENSHGLP00000009431
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247341,151,235 - 1,205,736 (+)Ensembl
RefSeq Acc Id: XM_004836880   ⟹   XP_004836937
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247341,151,292 - 1,205,654 (+)NCBI
RefSeq Acc Id: XM_004836881   ⟹   XP_004836938
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247341,121,966 - 1,205,654 (+)NCBI
RefSeq Acc Id: XM_021243772   ⟹   XP_021099431
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247341,151,285 - 1,205,654 (+)NCBI
RefSeq Acc Id: XM_021243781   ⟹   XP_021099440
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247341,157,294 - 1,205,654 (+)NCBI
RefSeq Acc Id: XR_002389081
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247341,151,284 - 1,205,654 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004836937 (Get FASTA)   NCBI Sequence Viewer  
  XP_004836938 (Get FASTA)   NCBI Sequence Viewer  
  XP_021099431 (Get FASTA)   NCBI Sequence Viewer  
  XP_021099440 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000009428
  ENSHGLP00000009431
GenBank Protein JAN99837 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_004836938   ⟸   XM_004836881
- Peptide Label: isoform X3
- UniProtKB: A0A0N8ETP6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021099431   ⟸   XM_021243772
- Peptide Label: isoform X1
- UniProtKB: A0A0N8ETP6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004836937   ⟸   XM_004836880
- Peptide Label: isoform X2
- UniProtKB: A0A0N8ETP6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021099440   ⟸   XM_021243781
- Peptide Label: isoform X4
- UniProtKB: A0A0N8ETP6 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000009428   ⟸   ENSHGLT00000009533
RefSeq Acc Id: ENSHGLP00000009430   ⟸   ENSHGLT00000009535
RefSeq Acc Id: ENSHGLP00000009431   ⟸   ENSHGLT00000009536
RefSeq Acc Id: ENSHGLP00000009429   ⟸   ENSHGLT00000009534


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000006763 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000009533 ENTREZGENE
  ENSHGLT00000009534 ENTREZGENE
  ENSHGLT00000009536 ENTREZGENE
Gene3D-CATH 1.25.40.20 UniProtKB/TrEMBL
InterPro Ankyrin_rpt UniProtKB/TrEMBL
  Ankyrin_rpt-contain_sf UniProtKB/TrEMBL
  ASPP1/2 UniProtKB/TrEMBL
  ASPP2-like_RA UniProtKB/TrEMBL
  ASPP_1 UniProtKB/TrEMBL
  SH3-like_dom_sf UniProtKB/TrEMBL
  SH3_domain UniProtKB/TrEMBL
  Ubiquitin-like_domsf UniProtKB/TrEMBL
NCBI Gene Ppp1r13b ENTREZGENE
PANTHER APOPTOSIS-STIMULATING OF P53 PROTEIN UniProtKB/TrEMBL
  PTHR24131:SF5 UniProtKB/TrEMBL
Pfam Ank_2 UniProtKB/TrEMBL
  ASPP2-like_RA UniProtKB/TrEMBL
  SH3_1 UniProtKB/TrEMBL
PRINTS SH3DOMAIN UniProtKB/TrEMBL
PROSITE ANK_REP_REGION UniProtKB/TrEMBL
  ANK_REPEAT UniProtKB/TrEMBL
  SH3 UniProtKB/TrEMBL
SMART ANK UniProtKB/TrEMBL
  SH3 UniProtKB/TrEMBL
Superfamily-SCOP SSF48403 UniProtKB/TrEMBL
  SSF50044 UniProtKB/TrEMBL
  SSF54236 UniProtKB/TrEMBL
UniProt A0A0N8ETP6 ENTREZGENE, UniProtKB/TrEMBL