Gcc2 (GRIP and coiled-coil domain containing 2) - Rat Genome Database

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Gene: Gcc2 (GRIP and coiled-coil domain containing 2) Heterocephalus glaber
Analyze
Symbol: Gcc2
Name: GRIP and coiled-coil domain containing 2
RGD ID: 18935107
Description: ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN Golgi ribbon formation (ortholog); Golgi to plasma membrane protein transport (ortholog); microtubule anchoring (ortholog); ASSOCIATED WITH autosomal dominant distal hereditary motor neuronopathy 7 (ortholog); ectodermal dysplasia 10A (ortholog); ENCEPHALOPATHY, ACUTE, INFECTION-INDUCED, SUSCEPTIBILITY TO, 3 (ortholog); FOUND IN nucleoplasm (ortholog); trans-Golgi network (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: GRIP and coiled-coil domain-containing protein 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474911,670,475 - 11,710,053 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474911,670,493 - 11,709,830 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Gcc2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474911,670,475 - 11,710,053 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474911,670,493 - 11,709,830 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
GCC2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382108,449,206 - 108,509,415 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2108,449,107 - 108,509,415 (+)EnsemblGRCh38hg38GRCh38
GRCh372109,065,662 - 109,125,871 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362108,432,068 - 108,492,286 (+)NCBINCBI36Build 36hg18NCBI36
Celera2103,373,681 - 103,433,949 (+)NCBICelera
Cytogenetic Map2q12.3NCBI
HuRef2102,664,749 - 102,724,917 (+)NCBIHuRef
CHM1_12109,069,859 - 109,130,068 (+)NCBICHM1_1
T2T-CHM13v2.02108,909,826 - 108,970,093 (+)NCBIT2T-CHM13v2.0
Gcc2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391058,091,240 - 58,141,421 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1058,091,319 - 58,141,421 (+)EnsemblGRCm39 Ensembl
GRCm381058,255,408 - 58,305,599 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1058,255,497 - 58,305,599 (+)EnsemblGRCm38mm10GRCm38
MGSCv371057,718,274 - 57,768,340 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361057,650,883 - 57,700,949 (+)NCBIMGSCv36mm8
Celera1058,993,423 - 59,043,634 (+)NCBICelera
Cytogenetic Map10B4NCBI
cM Map1029.3NCBI
Gcc2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82026,788,472 - 26,836,728 (+)NCBIGRCr8
mRatBN7.22026,247,394 - 26,293,613 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2026,247,404 - 26,293,613 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2027,249,780 - 27,296,009 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02026,636,136 - 26,682,363 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02027,384,236 - 27,430,382 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02027,832,960 - 27,879,764 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2027,832,932 - 27,879,759 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02029,653,397 - 29,699,347 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42037,472,178 - 37,518,324 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12037,487,402 - 37,531,803 (-)NCBI
Celera2027,699,422 - 27,745,448 (+)NCBICelera
Cytogenetic Map20q11NCBI
Gcc2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495547012,011,708 - 12,055,907 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495547012,011,606 - 12,053,625 (+)NCBIChiLan1.0ChiLan1.0
GCC2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21220,582,674 - 20,644,868 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A20,585,441 - 20,647,635 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A94,659,117 - 94,721,491 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A109,682,051 - 109,735,166 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A109,682,552 - 109,734,682 (+)Ensemblpanpan1.1panPan2
GCC2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11035,379,055 - 35,431,500 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1035,379,030 - 35,431,457 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1035,300,063 - 35,353,804 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01036,230,723 - 36,284,497 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1036,230,737 - 36,284,102 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11035,959,192 - 36,012,964 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01036,246,341 - 36,300,364 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01036,434,983 - 36,489,300 (-)NCBIUU_Cfam_GSD_1.0
Gcc2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629292,336,321 - 92,384,642 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493682913,229 - 62,510 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493682913,235 - 61,556 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GCC2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl347,718,254 - 47,758,999 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1347,718,251 - 47,759,060 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2349,887,515 - 49,928,295 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GCC2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11411,962,757 - 12,026,045 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1411,963,689 - 12,027,503 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660807,721,301 - 7,787,257 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000026903   ⟹   ENSHGLP00000026666
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462474911,670,475 - 11,710,053 (+)Ensembl
RefSeq Acc Id: XM_004844504   ⟹   XP_004844561
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474911,670,493 - 11,709,830 (+)NCBI
RefSeq Acc Id: XM_021258151   ⟹   XP_021113810
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474911,670,498 - 11,709,830 (+)NCBI
RefSeq Acc Id: XM_021258152   ⟹   XP_021113811
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474911,670,635 - 11,709,830 (+)NCBI
RefSeq Acc Id: XM_021258153   ⟹   XP_021113812
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474911,683,647 - 11,709,830 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004844561 (Get FASTA)   NCBI Sequence Viewer  
  XP_021113810 (Get FASTA)   NCBI Sequence Viewer  
  XP_021113811 (Get FASTA)   NCBI Sequence Viewer  
  XP_021113812 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000026666
GenBank Protein JAN98727 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_004844561   ⟸   XM_004844504
- Peptide Label: isoform X2
- UniProtKB: A0A0P6J3F3 (UniProtKB/TrEMBL),   G5CB89 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021113810   ⟸   XM_021258151
- Peptide Label: isoform X1
- UniProtKB: G5CB89 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021113811   ⟸   XM_021258152
- Peptide Label: isoform X3
- UniProtKB: G5CB89 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021113812   ⟸   XM_021258153
- Peptide Label: isoform X4
RefSeq Acc Id: ENSHGLP00000026666   ⟸   ENSHGLT00000026903


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000018970 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000026903 ENTREZGENE
Gene3D-CATH GRIP domain UniProtKB/TrEMBL
InterPro GCC2_Rab_bind UniProtKB/TrEMBL
  GRIP_dom UniProtKB/TrEMBL
KEGG Report hgl:101725764 UniProtKB/TrEMBL
NCBI Gene Gcc2 ENTREZGENE
PANTHER GRIP AND COILED-COIL DOMAIN-CONTAINING PROTEIN 2 UniProtKB/TrEMBL
  NUCLEAR MITOTIC APPARATUS PROTEIN 1-RELATED UniProtKB/TrEMBL
Pfam GRIP UniProtKB/TrEMBL
  Rab_bind UniProtKB/TrEMBL
PROSITE GRIP UniProtKB/TrEMBL
SMART Grip UniProtKB/TrEMBL
UniProt A0A0P6J3F3 ENTREZGENE, UniProtKB/TrEMBL
  G5CB89 ENTREZGENE, UniProtKB/TrEMBL