Slirp (SRA stem-loop interacting RNA binding protein) - Rat Genome Database

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Gene: Slirp (SRA stem-loop interacting RNA binding protein) Heterocephalus glaber
Analyze
Symbol: Slirp
Name: SRA stem-loop interacting RNA binding protein
RGD ID: 18935057
Description: ENCODES a protein that exhibits nucleic acid binding (inferred); RNA binding (inferred); INVOLVED IN flagellated sperm motility (ortholog); mitochondrion organization (ortholog); negative regulation of mitochondrial RNA catabolic process (ortholog); ASSOCIATED WITH genetic disease (ortholog); mitochondrial encephalomyopathy (ortholog); FOUND IN acrosomal vesicle (ortholog); cytoplasm (ortholog); mitochondrion (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: SRA stem-loop-interacting RNA-binding protein, mitochondrial
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473424,191,979 - 24,197,680 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473424,191,944 - 24,196,944 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:22301074  


Genomics

Comparative Map Data
Slirp
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473424,191,979 - 24,197,680 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473424,191,944 - 24,196,944 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
SLIRP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381477,708,071 - 77,717,598 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1477,708,071 - 77,761,104 (+)EnsemblGRCh38hg38GRCh38
GRCh371478,174,414 - 78,183,941 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361477,244,188 - 77,253,694 (+)NCBINCBI36Build 36hg18NCBI36
Build 341477,244,187 - 77,253,692NCBI
Celera1458,212,937 - 58,222,439 (+)NCBICelera
Cytogenetic Map14q24.3NCBI
HuRef1458,340,405 - 58,349,918 (+)NCBIHuRef
CHM1_11478,113,886 - 78,123,414 (+)NCBICHM1_1
T2T-CHM13v2.01471,917,426 - 71,926,933 (+)NCBIT2T-CHM13v2.0
Slirp
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391287,490,666 - 87,496,694 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1287,490,666 - 87,498,976 (+)EnsemblGRCm39 Ensembl
GRCm381287,443,896 - 87,449,924 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1287,443,896 - 87,452,206 (+)EnsemblGRCm38mm10GRCm38
MGSCv371288,784,846 - 88,790,874 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361288,333,015 - 88,339,021 (+)NCBIMGSCv36mm8
Celera1288,908,518 - 88,914,546 (+)NCBICelera
Cytogenetic Map12D2NCBI
cM Map1241.67NCBI
Slirp
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86112,819,684 - 112,828,715 (+)NCBIGRCr8
mRatBN7.26107,088,760 - 107,097,791 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6107,088,403 - 107,097,791 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx6107,257,674 - 107,266,700 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06107,556,491 - 107,565,517 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06106,926,189 - 106,935,215 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.06111,476,768 - 111,486,039 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6111,476,768 - 111,486,039 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06120,757,482 - 120,766,753 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46111,682,052 - 111,691,083 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera6104,908,488 - 104,917,534 (+)NCBICelera
Cytogenetic Map6q31NCBI
Slirp
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554381,556,462 - 1,561,561 (+)NCBIChiLan1.0ChiLan1.0
SLIRP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21578,794,056 - 78,803,744 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11478,010,561 - 78,020,249 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01458,262,126 - 58,271,829 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11477,462,870 - 77,472,380 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1477,462,875 - 77,516,882 (+)Ensemblpanpan1.1panPan2
SLIRP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1850,471,175 - 50,478,923 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl850,471,228 - 50,481,268 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha850,158,600 - 50,166,343 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0850,705,481 - 50,713,228 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl850,705,533 - 50,715,572 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1850,367,496 - 50,375,211 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0850,390,405 - 50,398,346 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0850,789,298 - 50,797,024 (+)NCBIUU_Cfam_GSD_1.0
Slirp
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864025,574,410 - 25,582,177 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364886,485,981 - 6,495,522 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364886,486,807 - 6,494,555 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLIRP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl7100,710,234 - 100,720,374 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.17100,710,472 - 100,718,290 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
SLIRP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12454,967,400 - 54,976,596 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2454,966,605 - 54,978,597 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605343,154,008 - 43,163,502 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000026204   ⟹   ENSHGLP00000025974
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462473424,191,979 - 24,197,680 (-)Ensembl
RefSeq Acc Id: XM_004837118   ⟹   XP_004837175
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473424,191,944 - 24,196,944 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004837175 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB01248 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000025974
Reference Protein Sequences
RefSeq Acc Id: XP_004837175   ⟸   XM_004837118
- UniProtKB: G5AW37 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000025974   ⟸   ENSHGLT00000026204


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000018491 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000026204 ENTREZGENE
Gene3D-CATH 3.30.70.330 UniProtKB/TrEMBL
InterPro Nucleotide-bd_a/b_plait_sf UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/TrEMBL
  RRM_dom UniProtKB/TrEMBL
NCBI Gene Slirp ENTREZGENE
PANTHER BOULE-RELATED UniProtKB/TrEMBL
  RRM DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
Pfam RRM_1 UniProtKB/TrEMBL
PROSITE RRM UniProtKB/TrEMBL
SMART RRM UniProtKB/TrEMBL
Superfamily-SCOP RNA-binding domain, RBD UniProtKB/TrEMBL
UniProt G5AW37 ENTREZGENE, UniProtKB/TrEMBL