Cacnb3 (calcium voltage-gated channel auxiliary subunit beta 3) - Rat Genome Database

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Gene: Cacnb3 (calcium voltage-gated channel auxiliary subunit beta 3) Heterocephalus glaber
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Symbol: Cacnb3
Name: calcium voltage-gated channel auxiliary subunit beta 3
RGD ID: 18935048
Description: ENCODES a protein that exhibits calcium channel regulator activity (ortholog); high voltage-gated calcium channel activity (ortholog); protein kinase binding (ortholog); INVOLVED IN calcium ion transmembrane transport via high voltage-gated calcium channel (ortholog); calcium ion transport (ortholog); calcium ion transport into cytosol (ortholog); PARTICIPATES IN calcium transport pathway; calcium/calcium-mediated signaling pathway; ASSOCIATED WITH genetic disease (ortholog); Nerve Injuries (ortholog); ovarian cyst (ortholog); FOUND IN apical plasma membrane (ortholog); L-type voltage-gated calcium channel complex (ortholog); membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: voltage-dependent L-type calcium channel subunit beta-3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248163,334,684 - 3,347,842 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248163,334,934 - 3,348,355 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Cacnb3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248163,334,684 - 3,347,842 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248163,334,934 - 3,348,355 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
CACNB3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381248,814,480 - 48,828,941 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1248,813,794 - 48,828,941 (+)EnsemblGRCh38hg38GRCh38
GRCh371249,208,263 - 49,222,724 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361247,498,779 - 47,508,991 (+)NCBINCBI36Build 36hg18NCBI36
Build 341247,498,778 - 47,508,991NCBI
Celera1248,008,638 - 48,018,850 (+)NCBICelera
Cytogenetic Map12q13.12NCBI
HuRef1246,241,454 - 46,255,965 (+)NCBIHuRef
CHM1_11249,174,031 - 49,188,542 (+)NCBICHM1_1
T2T-CHM13v2.01248,776,505 - 48,790,968 (+)NCBIT2T-CHM13v2.0
Cacnb3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391598,526,317 - 98,542,410 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1598,528,721 - 98,542,410 (+)EnsemblGRCm39 Ensembl
GRCm381598,628,436 - 98,644,536 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1598,630,840 - 98,644,529 (+)EnsemblGRCm38mm10GRCm38
MGSCv371598,462,651 - 98,474,961 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361598,463,139 - 98,472,563 (+)NCBIMGSCv36mm8
Celera15100,780,822 - 100,793,130 (+)NCBICelera
Cytogenetic Map15F1NCBI
cM Map1554.64NCBI
Cacnb3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87131,663,810 - 131,676,085 (+)NCBIGRCr8
mRatBN7.27129,784,799 - 129,797,074 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7129,783,674 - 129,797,074 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7131,594,886 - 131,604,409 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07133,820,432 - 133,829,955 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07133,732,933 - 133,742,457 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07140,311,120 - 140,324,902 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7140,315,368 - 140,324,902 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X114,814,959 - 114,828,180 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47137,384,752 - 137,394,283 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17137,461,187 - 137,470,720 (+)NCBI
Celera7126,277,809 - 126,287,303 (+)NCBICelera
Cytogenetic Map7q36NCBI
Cacnb3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555007,672,828 - 7,687,420 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555007,676,331 - 7,685,174 (+)NCBIChiLan1.0ChiLan1.0
CACNB3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21045,352,328 - 45,367,080 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11245,349,089 - 45,362,466 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01239,918,022 - 39,931,386 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11240,797,293 - 40,811,409 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1240,797,293 - 40,811,409 (-)Ensemblpanpan1.1panPan2
CACNB3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1275,705,587 - 5,714,620 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl275,706,064 - 5,717,647 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2740,539,137 - 40,552,356 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0275,756,425 - 5,769,646 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl275,756,425 - 5,769,631 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1275,720,277 - 5,733,496 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0275,710,377 - 5,723,584 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02740,931,388 - 40,944,607 (+)NCBIUU_Cfam_GSD_1.0
Cacnb3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494566,498,659 - 66,511,978 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365126,653,777 - 6,666,758 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365126,652,836 - 6,666,171 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CACNB3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl514,874,465 - 14,888,223 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1514,875,524 - 14,888,224 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2515,172,444 - 15,182,010 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CACNB3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11145,056,116 - 45,071,076 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1145,061,046 - 45,071,544 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037201,075,907 - 201,090,442 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


RefSeq Acc Id: ENSHGLT00000010983   ⟹   ENSHGLP00000010861
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248163,334,684 - 3,347,842 (-)Ensembl
RefSeq Acc Id: ENSHGLT00000010984   ⟹   ENSHGLP00000010862
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248163,334,939 - 3,344,391 (-)Ensembl
RefSeq Acc Id: ENSHGLT00000010985   ⟹   ENSHGLP00000010863
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248163,335,938 - 3,344,355 (-)Ensembl
RefSeq Acc Id: XM_004863068   ⟹   XP_004863125
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248163,334,934 - 3,344,573 (-)NCBI
RefSeq Acc Id: XM_004863069   ⟹   XP_004863126
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248163,334,934 - 3,347,402 (-)NCBI
RefSeq Acc Id: XM_004863070   ⟹   XP_004863127
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248163,334,934 - 3,344,576 (-)NCBI
RefSeq Acc Id: XM_004863072   ⟹   XP_004863129
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248163,334,934 - 3,344,247 (-)NCBI
RefSeq Acc Id: XM_004863073   ⟹   XP_004863130
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248163,334,934 - 3,344,572 (-)NCBI
RefSeq Acc Id: XM_021243045   ⟹   XP_021098704
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248163,334,934 - 3,348,355 (-)NCBI
RefSeq Acc Id: XP_021098704   ⟸   XM_021243045
- Peptide Label: isoform X5
- UniProtKB: G5AU42 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004863126   ⟸   XM_004863069
- Peptide Label: isoform X3
- UniProtKB: G5AU42 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004863127   ⟸   XM_004863070
- Peptide Label: isoform X2
- UniProtKB: G5AU42 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004863125   ⟸   XM_004863068
- Peptide Label: isoform X1
- UniProtKB: G5AU42 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004863130   ⟸   XM_004863073
- Peptide Label: isoform X4
- UniProtKB: G5AU42 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004863129   ⟸   XM_004863072
- Peptide Label: isoform X4
- UniProtKB: G5AU42 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000010862   ⟸   ENSHGLT00000010984
RefSeq Acc Id: ENSHGLP00000010863   ⟸   ENSHGLT00000010985
RefSeq Acc Id: ENSHGLP00000010861   ⟸   ENSHGLT00000010983


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000007792 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000010983 ENTREZGENE
  ENSHGLT00000010984 ENTREZGENE
  ENSHGLT00000010985 ENTREZGENE
Gene3D-CATH P-loop containing nucleotide triphosphate hydrolases UniProtKB/TrEMBL
  SH3 Domains UniProtKB/TrEMBL
InterPro CAB1-4_N_A-dom UniProtKB/TrEMBL
  CACNB3_SH3 UniProtKB/TrEMBL
  GK/Ca_channel_bsu UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  SH3-like_dom_sf UniProtKB/TrEMBL
  SH3_domain UniProtKB/TrEMBL
  VDCC_L_b3su UniProtKB/TrEMBL
  VDCC_L_bsu UniProtKB/TrEMBL
NCBI Gene Cacnb3 ENTREZGENE
PANTHER VOLTAGE-DEPENDENT CALCIUM CHANNEL BETA SUBUNIT UniProtKB/TrEMBL
  VOLTAGE-DEPENDENT L-TYPE CALCIUM CHANNEL SUBUNIT BETA-3 UniProtKB/TrEMBL
Pfam Guanylate_kin UniProtKB/TrEMBL
  VGCC_beta4Aa_N UniProtKB/TrEMBL
PRINTS LCACHANNELB UniProtKB/TrEMBL
  LCACHANNELB3 UniProtKB/TrEMBL
PROSITE SH3 UniProtKB/TrEMBL
SMART GuKc UniProtKB/TrEMBL
Superfamily-SCOP P-loop containing nucleoside triphosphate hydrolases UniProtKB/TrEMBL
  SH3-domain UniProtKB/TrEMBL
UniProt G5AU42 ENTREZGENE, UniProtKB/TrEMBL