Sumf1 (sulfatase modifying factor 1) - Rat Genome Database

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Gene: Sumf1 (sulfatase modifying factor 1) Heterocephalus glaber
Analyze
Symbol: Sumf1
Name: sulfatase modifying factor 1
RGD ID: 18935037
Description: ENCODES a protein that exhibits identical protein binding (ortholog); ASSOCIATED WITH mucosulfatidosis (ortholog); sphingolipidosis (ortholog); FOUND IN endoplasmic reticulum (inferred); endoplasmic reticulum lumen (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Sulfatase-modifying factor 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477314,746,094 - 14,828,914 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477314,746,089 - 14,828,928 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:30032202  


Genomics

Comparative Map Data
Sumf1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477314,746,094 - 14,828,914 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477314,746,089 - 14,828,928 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
SUMF1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3833,700,814 - 3,800,875 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl33,700,814 - 4,467,273 (-)EnsemblGRCh38hg38GRCh38
GRCh3733,742,498 - 3,842,559 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3634,377,830 - 4,483,954 (-)NCBINCBI36Build 36hg18NCBI36
Build 3434,377,829 - 4,483,954NCBI
Celera34,340,773 - 4,447,046 (-)NCBICelera
Cytogenetic Map3p26.2NCBI
HuRef34,336,301 - 4,442,706 (-)NCBIHuRef
CHM1_133,733,077 - 3,819,079 (-)NCBICHM1_1
T2T-CHM13v2.033,696,988 - 3,797,158 (-)NCBIT2T-CHM13v2.0
Sumf1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396108,083,989 - 108,162,552 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6108,083,989 - 108,162,543 (-)EnsemblGRCm39 Ensembl
GRCm386108,107,021 - 108,185,591 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6108,107,028 - 108,185,582 (-)EnsemblGRCm38mm10GRCm38
MGSCv376108,057,022 - 108,135,576 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366108,072,805 - 108,151,333 (-)NCBIMGSCv36mm8
Celera6109,910,767 - 109,990,697 (-)NCBICelera
Cytogenetic Map6E1NCBI
cM Map649.71NCBI
Sumf1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84142,634,766 - 142,716,726 (-)NCBIGRCr8
mRatBN7.24141,078,735 - 141,160,711 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4141,078,741 - 141,160,708 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4146,495,350 - 146,582,629 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04142,276,073 - 142,363,346 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04140,920,035 - 141,007,308 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04140,139,017 - 140,220,482 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4140,139,003 - 140,220,487 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04204,606,895 - 204,688,362 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44143,596,618 - 143,678,517 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14143,841,457 - 143,923,349 (-)NCBI
Celera4129,731,612 - 129,812,899 (-)NCBICelera
Cytogenetic Map4q41NCBI
Sumf1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554218,981,211 - 9,049,948 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554218,982,059 - 9,050,936 (+)NCBIChiLan1.0ChiLan1.0
SUMF1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v223,784,278 - 4,480,847 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan133,888,323 - 4,486,797 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v034,314,790 - 4,422,503 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.134,415,726 - 4,523,850 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl34,415,726 - 4,523,850 (-)Ensemblpanpan1.1panPan2
SUMF1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12013,093,427 - 13,190,621 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2013,092,901 - 13,299,314 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2013,066,961 - 13,163,715 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02013,137,091 - 13,228,066 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2013,137,096 - 13,229,598 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12012,841,772 - 12,932,488 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02013,182,237 - 13,272,688 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02013,169,249 - 13,260,076 (+)NCBIUU_Cfam_GSD_1.0
Sumf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494210,836,722 - 10,910,566 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365773,791,862 - 3,866,125 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365773,792,108 - 3,865,967 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SUMF1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1360,946,021 - 61,037,295 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11360,946,718 - 61,037,298 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21367,255,357 - 67,345,941 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SUMF1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12240,443,134 - 40,547,480 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2240,444,131 - 40,547,448 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041126,121,865 - 126,226,535 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_004854233 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021266054 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021266055 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021266056 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021266057 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021266058 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021266059 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021266060 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021266061 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021266062 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021266064 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021266065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021266066 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002398087 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002398088 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002398089 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002398090 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002398091 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002398092 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002398093 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002398094 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002398095 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002398096 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002398097 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01052152 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01052153 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01052154 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01052155 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GEBF01004530 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JH169209 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSHGLT00000004479   ⟹   ENSHGLP00000004417
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462477314,746,094 - 14,828,914 (-)Ensembl
RefSeq Acc Id: ENSHGLT00000004480   ⟹   ENSHGLP00000004418
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462477314,747,004 - 14,828,914 (-)Ensembl
RefSeq Acc Id: ENSHGLT00000004481   ⟹   ENSHGLP00000004419
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462477314,747,004 - 14,828,914 (-)Ensembl
RefSeq Acc Id: XM_004854233   ⟹   XP_004854290
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462477314,746,089 - 14,828,928 (-)NCBI
RefSeq Acc Id: XM_021266054   ⟹   XP_021121713
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462477314,746,089 - 14,828,928 (-)NCBI
RefSeq Acc Id: XM_021266055   ⟹   XP_021121714
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462477314,746,089 - 14,828,928 (-)NCBI
RefSeq Acc Id: XM_021266056   ⟹   XP_021121715
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462477314,746,089 - 14,828,928 (-)NCBI
RefSeq Acc Id: XM_021266057   ⟹   XP_021121716
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462477314,746,089 - 14,828,928 (-)NCBI
RefSeq Acc Id: XM_021266058   ⟹   XP_021121717
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462477314,746,089 - 14,828,928 (-)NCBI
RefSeq Acc Id: XM_021266059   ⟹   XP_021121718
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462477314,746,089 - 14,828,928 (-)NCBI
RefSeq Acc Id: XM_021266060   ⟹   XP_021121719
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462477314,746,089 - 14,828,928 (-)NCBI
RefSeq Acc Id: XM_021266061   ⟹   XP_021121720
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462477314,746,089 - 14,828,928 (-)NCBI
RefSeq Acc Id: XM_021266062   ⟹   XP_021121721
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462477314,746,089 - 14,828,928 (-)NCBI
RefSeq Acc Id: XM_021266064   ⟹   XP_021121723
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462477314,746,089 - 14,828,928 (-)NCBI
RefSeq Acc Id: XM_021266065   ⟹   XP_021121724
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462477314,746,089 - 14,828,928 (-)NCBI
RefSeq Acc Id: XM_021266066   ⟹   XP_021121725
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462477314,746,089 - 14,828,928 (-)NCBI
RefSeq Acc Id: XR_002398087
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462477314,746,089 - 14,828,928 (-)NCBI
RefSeq Acc Id: XR_002398088
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462477314,746,089 - 14,828,928 (-)NCBI
RefSeq Acc Id: XR_002398089
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462477314,746,089 - 14,828,928 (-)NCBI
RefSeq Acc Id: XR_002398090
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462477314,746,089 - 14,828,928 (-)NCBI
RefSeq Acc Id: XR_002398091
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462477314,746,089 - 14,828,928 (-)NCBI
RefSeq Acc Id: XR_002398092
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462477314,746,089 - 14,828,928 (-)NCBI
RefSeq Acc Id: XR_002398093
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462477314,746,089 - 14,828,928 (-)NCBI
RefSeq Acc Id: XR_002398094
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462477314,746,089 - 14,828,928 (-)NCBI
RefSeq Acc Id: XR_002398095
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462477314,746,089 - 14,828,928 (-)NCBI
RefSeq Acc Id: XR_002398096
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462477314,746,089 - 14,828,928 (-)NCBI
RefSeq Acc Id: XR_002398097
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462477314,746,089 - 14,828,928 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_021121725   ⟸   XM_021266066
- Peptide Label: isoform X13
RefSeq Acc Id: XP_021121717   ⟸   XM_021266058
- Peptide Label: isoform X5
RefSeq Acc Id: XP_004854290   ⟸   XM_004854233
- Peptide Label: isoform X12
- UniProtKB: G5BA10 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021121723   ⟸   XM_021266064
- Peptide Label: isoform X10
RefSeq Acc Id: XP_021121715   ⟸   XM_021266056
- Peptide Label: isoform X3
RefSeq Acc Id: XP_021121724   ⟸   XM_021266065
- Peptide Label: isoform X11
RefSeq Acc Id: XP_021121719   ⟸   XM_021266060
- Peptide Label: isoform X7
RefSeq Acc Id: XP_021121718   ⟸   XM_021266059
- Peptide Label: isoform X6
RefSeq Acc Id: XP_021121716   ⟸   XM_021266057
- Peptide Label: isoform X4
RefSeq Acc Id: XP_021121721   ⟸   XM_021266062
- Peptide Label: isoform X9
RefSeq Acc Id: XP_021121714   ⟸   XM_021266055
- Peptide Label: isoform X2
RefSeq Acc Id: XP_021121720   ⟸   XM_021266061
- Peptide Label: isoform X8
RefSeq Acc Id: XP_021121713   ⟸   XM_021266054
- Peptide Label: isoform X1
RefSeq Acc Id: ENSHGLP00000004418   ⟸   ENSHGLT00000004480
RefSeq Acc Id: ENSHGLP00000004419   ⟸   ENSHGLT00000004481
RefSeq Acc Id: ENSHGLP00000004417   ⟸   ENSHGLT00000004479


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000003230 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000004479 ENTREZGENE
  ENSHGLT00000004480 ENTREZGENE
Gene3D-CATH 3.90.1580.10 UniProtKB/TrEMBL
InterPro CTDL_fold UniProtKB/TrEMBL
  SUMF_dom UniProtKB/TrEMBL
  SUMF_sf UniProtKB/TrEMBL
KEGG Report hgl:101704938 UniProtKB/TrEMBL
NCBI Gene Sumf1 ENTREZGENE
PANTHER FORMYLGLYCINE-GENERATING ENZYME UniProtKB/TrEMBL
  SULFATASE MODIFYING FACTOR 1, 2 UniProtKB/TrEMBL
Pfam FGE-sulfatase UniProtKB/TrEMBL
Superfamily-SCOP SSF56436 UniProtKB/TrEMBL
UniProt G5BA10 ENTREZGENE, UniProtKB/TrEMBL