Lrig2 (leucine rich repeats and immunoglobulin like domains 2) - Rat Genome Database

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Gene: Lrig2 (leucine rich repeats and immunoglobulin like domains 2) Heterocephalus glaber
Analyze
Symbol: Lrig2
Name: leucine rich repeats and immunoglobulin like domains 2
RGD ID: 18935024
Description: ENCODES a protein that exhibits signaling receptor binding (ortholog); INVOLVED IN innervation (ortholog); membrane protein ectodomain proteolysis (ortholog); negative regulation of axon regeneration (ortholog); ASSOCIATED WITH amenorrhea (ortholog); Developmental Disabilities (ortholog); genetic disease (ortholog); FOUND IN growth cone (ortholog); intracellular vesicle (ortholog); membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: leucine-rich repeats and immunoglobulin-like domains protein 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247728,809,443 - 8,868,282 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247728,809,226 - 8,873,614 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Lrig2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247728,809,443 - 8,868,282 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247728,809,226 - 8,873,614 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
LRIG2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381113,073,198 - 113,132,260 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1113,073,198 - 113,132,260 (+)EnsemblGRCh38hg38GRCh38
GRCh371113,615,820 - 113,674,882 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361113,417,354 - 113,468,865 (+)NCBINCBI36Build 36hg18NCBI36
Build 341113,327,872 - 113,379,384NCBI
Celera1111,845,570 - 111,897,091 (+)NCBICelera
Cytogenetic Map1p13.2NCBI
HuRef1111,474,427 - 111,526,035 (+)NCBIHuRef
CHM1_11113,731,009 - 113,782,515 (+)NCBICHM1_1
T2T-CHM13v2.01113,085,129 - 113,144,193 (+)NCBIT2T-CHM13v2.0
Lrig2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393104,361,296 - 104,419,251 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3104,303,734 - 104,419,234 (-)EnsemblGRCm39 Ensembl
GRCm383104,453,980 - 104,511,918 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3104,396,418 - 104,511,918 (-)EnsemblGRCm38mm10GRCm38
MGSCv373104,257,906 - 104,315,779 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363104,583,044 - 104,640,917 (-)NCBIMGSCv36mm8
Celera3106,657,999 - 106,716,082 (-)NCBICelera
Cytogenetic Map3F2.2NCBI
cM Map345.62NCBI
Lrig2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82194,635,686 - 194,705,014 (-)NCBIGRCr8
mRatBN7.22191,947,322 - 192,012,996 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2191,949,819 - 192,012,579 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2199,545,581 - 199,606,756 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02197,418,300 - 197,479,465 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02192,235,270 - 192,296,421 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02206,928,708 - 206,997,915 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2206,931,204 - 206,997,519 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02226,351,489 - 226,419,762 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42199,683,178 - 199,746,140 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12199,647,153 - 199,709,361 (-)NCBI
Celera2184,419,354 - 184,480,307 (-)NCBICelera
Cytogenetic Map2q34NCBI
Lrig2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543516,468,509 - 16,521,868 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543516,468,300 - 16,522,503 (+)NCBIChiLan1.0ChiLan1.0
LOC117978217
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21113,923,538 - 113,972,566 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11113,071,620 - 113,123,956 (-)NCBINHGRI_mPanPan1
LRIG2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11762,487,802 - 62,548,883 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1762,489,462 - 62,548,666 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1762,002,209 - 62,155,979 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01763,661,470 - 63,722,625 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1763,670,920 - 63,722,623 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11762,397,010 - 62,551,758 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01762,454,587 - 62,608,116 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01763,214,287 - 63,367,946 (-)NCBIUU_Cfam_GSD_1.0
Lrig2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505815,834,380 - 15,996,712 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366901,591,965 - 1,641,544 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366901,591,741 - 1,642,183 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LRIG2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4107,348,669 - 107,492,516 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14107,348,662 - 107,511,308 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24117,496,595 - 117,511,433 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LRIG2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12020,523,713 - 20,575,577 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2020,524,352 - 20,574,224 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603823,303,353 - 23,493,479 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000023139   ⟹   ENSHGLP00000022925
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247728,809,443 - 8,868,282 (+)Ensembl
RefSeq Acc Id: XM_004853755   ⟹   XP_004853812
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247728,809,443 - 8,873,614 (+)NCBI
RefSeq Acc Id: XM_021265697   ⟹   XP_021121356
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247728,809,226 - 8,873,614 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004853812 (Get FASTA)   NCBI Sequence Viewer  
  XP_021121356 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000022925
GenBank Protein JAO00359 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_021121356   ⟸   XM_021265697
- Peptide Label: isoform X2
RefSeq Acc Id: XP_004853812   ⟸   XM_004853755
- Peptide Label: isoform X1
RefSeq Acc Id: ENSHGLP00000022925   ⟸   ENSHGLT00000023139


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000016354 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000023139 ENTREZGENE
NCBI Gene Lrig2 ENTREZGENE