Ccdc15 (coiled-coil domain containing 15) - Rat Genome Database

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Gene: Ccdc15 (coiled-coil domain containing 15) Heterocephalus glaber
Analyze
Symbol: Ccdc15
Name: coiled-coil domain containing 15
RGD ID: 18934996
Description: ASSOCIATED WITH Chromosome 11, Partial Trisomy 11q (ortholog); Dwarfism (ortholog); genetic disease (ortholog); FOUND IN centrosome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Coiled-coil domain-containing protein 15
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624927962,958 - 1,084,156 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624927963,083 - 1,105,668 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
centrosome  (ISO)

References
Additional References at PubMed
PMID:21993625   PMID:30032202  


Genomics

Comparative Map Data
Ccdc15
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624927962,958 - 1,084,156 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624927963,083 - 1,105,668 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
CCDC15
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811124,954,202 - 125,041,489 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11124,954,121 - 125,041,489 (+)EnsemblGRCh38hg38GRCh38
GRCh3711124,824,098 - 124,911,385 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3611124,329,227 - 124,416,595 (+)NCBINCBI36Build 36hg18NCBI36
Celera11121,984,158 - 122,071,427 (+)NCBICelera
Cytogenetic Map11q24.2NCBI
HuRef11120,766,209 - 120,853,474 (+)NCBIHuRef
CHM1_111124,710,126 - 124,797,386 (+)NCBICHM1_1
T2T-CHM13v2.011124,982,721 - 125,070,161 (+)NCBIT2T-CHM13v2.0
Ccdc15
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39937,178,758 - 37,262,508 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl937,187,131 - 37,259,728 (-)EnsemblGRCm39 Ensembl
GRCm38937,267,462 - 37,350,218 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl937,275,835 - 37,348,432 (-)EnsemblGRCm38mm10GRCm38
MGSCv37937,083,420 - 37,155,977 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36937,025,506 - 37,098,105 (-)NCBIMGSCv36mm8
Celera934,490,165 - 34,562,711 (-)NCBICelera
Cytogenetic Map9A4NCBI
cM Map920.74NCBI
Ccdc15
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8845,165,297 - 45,257,641 (-)NCBIGRCr8
mRatBN7.2836,991,147 - 37,068,849 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl836,998,867 - 37,068,919 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0839,759,077 - 39,830,235 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl839,762,035 - 39,830,306 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0839,757,789 - 39,846,057 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4838,534,697 - 38,603,744 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1838,572,522 - 38,612,510 (-)NCBI
Celera837,382,910 - 37,453,937 (+)NCBICelera
Cytogenetic Map8q22NCBI
Ccdc15
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541226,005,090 - 26,089,615 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541226,014,842 - 26,089,556 (+)NCBIChiLan1.0ChiLan1.0
CCDC15
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v29125,650,094 - 125,750,743 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan111126,754,989 - 126,850,884 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v011119,781,702 - 119,872,629 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111123,696,106 - 123,783,190 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11123,696,718 - 123,782,549 (+)Ensemblpanpan1.1panPan2
CCDC15
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.159,425,436 - 9,505,370 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl59,425,997 - 9,504,919 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha59,467,551 - 9,550,498 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.059,361,883 - 9,444,671 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl59,364,705 - 9,444,598 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.159,434,680 - 9,517,431 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.059,405,174 - 9,487,965 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.059,441,819 - 9,524,807 (-)NCBIUU_Cfam_GSD_1.0
Ccdc15
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947107,140,521 - 107,214,867 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049367431,441,967 - 1,462,462 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCDC15
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl952,147,082 - 52,217,674 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1952,146,298 - 52,217,679 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2957,654,393 - 57,731,500 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CCDC15
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11116,086,222 - 116,203,398 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660439,917,198 - 10,020,384 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_013069144 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021251921 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021251922 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021251923 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021251924 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021251925 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01105028 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01105029 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01105030 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01105031 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01105032 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01105033 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01105034 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01105035 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01105036 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01105037 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01105038 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01105039 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01105040 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01105041 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JH169808 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSHGLT00000006482   ⟹   ENSHGLP00000006401
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_004624927962,958 - 1,084,156 (+)Ensembl
RefSeq Acc Id: XM_013069144   ⟹   XP_012924598
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624927963,083 - 1,082,557 (+)NCBI
RefSeq Acc Id: XM_021251921   ⟹   XP_021107580
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624927963,085 - 1,082,555 (+)NCBI
RefSeq Acc Id: XM_021251922   ⟹   XP_021107581
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624927963,085 - 1,082,555 (+)NCBI
RefSeq Acc Id: XM_021251923   ⟹   XP_021107582
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624927963,086 - 1,105,668 (+)NCBI
RefSeq Acc Id: XM_021251924   ⟹   XP_021107583
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624927963,084 - 1,082,556 (+)NCBI
RefSeq Acc Id: XM_021251925   ⟹   XP_021107584
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624927963,084 - 1,082,556 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_012924598   ⟸   XM_013069144
- Peptide Label: isoform X5
RefSeq Acc Id: XP_021107583   ⟸   XM_021251924
- Peptide Label: isoform X3
RefSeq Acc Id: XP_021107584   ⟸   XM_021251925
- Peptide Label: isoform X4
RefSeq Acc Id: XP_021107580   ⟸   XM_021251921
- Peptide Label: isoform X1
RefSeq Acc Id: XP_021107581   ⟸   XM_021251922
- Peptide Label: isoform X1
RefSeq Acc Id: XP_021107582   ⟸   XM_021251923
- Peptide Label: isoform X2
RefSeq Acc Id: ENSHGLP00000006401   ⟸   ENSHGLT00000006482


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000004674 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000006482 ENTREZGENE
NCBI Gene Ccdc15 ENTREZGENE