Fbxo46 (F-box protein 46) - Rat Genome Database

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Gene: Fbxo46 (F-box protein 46) Heterocephalus glaber
Analyze
Symbol: Fbxo46
Name: F-box protein 46
RGD ID: 18934824
Description: ASSOCIATED WITH genetic disease (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: F-box only protein 46
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248327,473,719 - 7,475,557 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248327,461,768 - 7,476,571 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Fbxo46
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248327,473,719 - 7,475,557 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248327,461,768 - 7,476,571 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
FBXO46
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381945,710,629 - 45,733,177 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1945,710,629 - 45,730,896 (-)EnsemblGRCh38hg38GRCh38
GRCh371946,213,887 - 46,236,435 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361950,905,727 - 50,925,991 (-)NCBINCBI36Build 36hg18NCBI36
Celera1943,020,015 - 43,040,278 (-)NCBICelera
Cytogenetic Map19q13.32NCBI
HuRef1942,642,747 - 42,663,036 (-)NCBIHuRef
CHM1_11946,217,358 - 46,237,620 (-)NCBICHM1_1
T2T-CHM13v2.01948,538,171 - 48,560,723 (-)NCBIT2T-CHM13v2.0
Fbxo46
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39718,853,784 - 18,872,186 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl718,853,784 - 18,874,097 (+)EnsemblGRCm39 Ensembl
GRCm38719,119,859 - 19,138,261 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl719,119,859 - 19,140,172 (+)EnsemblGRCm38mm10GRCm38
MGSCv37719,705,208 - 19,723,610 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36718,278,392 - 18,296,777 (+)NCBIMGSCv36mm8
Celera716,531,201 - 16,549,614 (+)NCBICelera
Cytogenetic Map7A3NCBI
cM Map79.46NCBI
Fbxo46
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8187,898,029 - 87,914,615 (+)NCBIGRCr8
mRatBN7.2178,770,059 - 78,786,582 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl178,770,018 - 78,790,097 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx184,159,152 - 84,175,617 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0192,716,827 - 92,733,257 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0185,914,254 - 85,930,719 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0180,028,873 - 80,045,666 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl180,028,928 - 80,045,341 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0181,296,252 - 81,312,729 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4178,480,914 - 78,497,104 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1178,559,024 - 78,575,215 (+)NCBI
Celera173,235,831 - 73,252,251 (+)NCBICelera
Cytogenetic Map1q21NCBI
Fbxo46
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955574177,374 - 182,143 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955574177,374 - 191,720 (-)NCBIChiLan1.0ChiLan1.0
FBXO46
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22051,871,738 - 51,892,083 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11953,743,186 - 53,763,518 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01942,715,616 - 42,735,949 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11951,252,675 - 51,273,444 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1951,253,737 - 51,255,548 (-)Ensemblpanpan1.1panPan2
FBXO46
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11109,863,907 - 109,878,908 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1109,875,994 - 109,877,847 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1109,349,088 - 109,364,060 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01110,397,172 - 110,412,167 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1110,397,239 - 110,412,643 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11110,072,790 - 110,087,733 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01109,707,441 - 109,722,373 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01110,576,252 - 110,591,238 (+)NCBIUU_Cfam_GSD_1.0
Fbxo46
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934917,733,396 - 17,748,077 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367062,081,780 - 2,083,591 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367062,080,744 - 2,095,350 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FBXO46
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl652,053,281 - 52,069,166 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1652,053,277 - 52,069,190 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
FBXO46
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1639,152,174 - 39,175,059 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl639,152,840 - 39,154,651 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607318,781,689 - 18,805,008 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000011570   ⟹   ENSHGLP00000011443
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248327,473,719 - 7,475,557 (+)Ensembl
RefSeq Acc Id: XM_004867137   ⟹   XP_004867194
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248327,471,100 - 7,476,571 (+)NCBI
RefSeq Acc Id: XM_004867138   ⟹   XP_004867195
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248327,461,769 - 7,476,571 (+)NCBI
RefSeq Acc Id: XM_004867139   ⟹   XP_004867196
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248327,469,276 - 7,476,571 (+)NCBI
RefSeq Acc Id: XM_021245759   ⟹   XP_021101418
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248327,461,768 - 7,476,571 (+)NCBI
RefSeq Acc Id: XM_021245760   ⟹   XP_021101419
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248327,470,994 - 7,476,571 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_021101418   ⟸   XM_021245759
- UniProtKB: G5AUX6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004867195   ⟸   XM_004867138
- UniProtKB: G5AUX6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004867196   ⟸   XM_004867139
- UniProtKB: G5AUX6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021101419   ⟸   XM_021245760
- UniProtKB: G5AUX6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004867194   ⟸   XM_004867137
- UniProtKB: G5AUX6 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000011443   ⟸   ENSHGLT00000011570


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000008204 Ensembl
Gene3D-CATH 1.20.1280.50 UniProtKB/TrEMBL
InterPro F-box-like_dom_sf UniProtKB/TrEMBL
  F-box_dom UniProtKB/TrEMBL
  FBXO34/46 UniProtKB/TrEMBL
NCBI Gene Fbxo46 ENTREZGENE
PANTHER F-BOX ONLY PROTEIN 34/46 FAMILY MEMBER UniProtKB/TrEMBL
  F-BOX ONLY PROTEIN 46 UniProtKB/TrEMBL
Pfam F-box-like UniProtKB/TrEMBL
PROSITE FBOX UniProtKB/TrEMBL
SMART FBOX UniProtKB/TrEMBL
Superfamily-SCOP F-box domain UniProtKB/TrEMBL
UniProt G5AUX6 ENTREZGENE, UniProtKB/TrEMBL