Uba52 (ubiquitin A-52 residue ribosomal protein fusion product 1) - Rat Genome Database

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Gene: Uba52 (ubiquitin A-52 residue ribosomal protein fusion product 1) Heterocephalus glaber
Analyze
Symbol: Uba52
Name: ubiquitin A-52 residue ribosomal protein fusion product 1 (Ensembl:KxDL motif containing 1)
RGD ID: 18934774
Description: ENCODES a protein that exhibits protein tag activity (inferred); RNA binding (inferred); structural constituent of ribosome (inferred); INVOLVED IN response to insecticide (ortholog); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; ASSOCIATED WITH Brain Injuries (ortholog); colon carcinoma (ortholog); Diabetic Nephropathies (ortholog); FOUND IN cytoplasmic side of rough endoplasmic reticulum membrane (ortholog); cytosol (ortholog); cytosolic large ribosomal subunit (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Ubiquitin; ubiquitin-60S ribosomal protein L40
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249081,736,899 - 1,750,516 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249081,745,903 - 1,748,750 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Uba52
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249081,736,899 - 1,750,516 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249081,745,903 - 1,748,750 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
UBA52
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381918,563,766 - 18,577,550 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1918,571,730 - 18,577,550 (+)EnsemblGRCh38hg38GRCh38
GRCh371918,682,534 - 18,688,360 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361918,543,614 - 18,549,270 (+)NCBINCBI36Build 36hg18NCBI36
Build 341918,543,667 - 18,547,050NCBI
Celera1918,584,823 - 18,590,479 (+)NCBICelera
Cytogenetic Map19p13.11NCBI
HuRef1918,245,210 - 18,250,866 (+)NCBIHuRef
CHM1_11918,682,813 - 18,688,469 (+)NCBICHM1_1
T2T-CHM13v2.01918,698,806 - 18,712,614 (+)NCBIT2T-CHM13v2.0
Uba52
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39870,960,913 - 70,963,067 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl870,960,913 - 70,963,451 (-)EnsemblGRCm39 Ensembl
GRCm38870,508,263 - 70,510,417 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl43,973,092 - 3,973,595 (-)EnsemblGRCm38mm10GRCm38
GRCm38.p6 Ensembl870,508,263 - 70,510,801 (-)EnsemblGRCm38mm10GRCm38
MGSCv37873,032,165 - 73,034,266 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36873,437,255 - 73,439,356 (-)NCBIMGSCv36mm8
Celera873,064,684 - 73,066,785 (-)NCBICelera
Cytogenetic Map8B3.3NCBI
cM Map834.15NCBI
Uba52
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81618,952,583 - 18,954,780 (+)NCBIGRCr8
mRatBN7.21618,918,614 - 18,920,807 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1618,900,616 - 18,920,807 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1618,960,438 - 18,962,595 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01620,093,260 - 20,095,416 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01619,013,400 - 19,015,557 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01620,668,925 - 20,671,127 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1620,668,971 - 20,671,127 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01620,524,450 - 20,526,606 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41619,425,401 - 19,427,557 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11619,425,406 - 19,427,555 (+)NCBI
Celera1619,110,027 - 19,112,183 (+)NCBICelera
Cytogenetic Map16p14NCBI
Uba52
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555243,006,147 - 3,018,772 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555243,007,074 - 3,009,886 (-)NCBIChiLan1.0ChiLan1.0
UBA52
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22023,430,681 - 23,434,163 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11922,439,183 - 22,442,650 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01918,040,946 - 18,052,445 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11919,018,821 - 19,022,263 (+)NCBIpanpan1.1PanPan1.1panPan2
UBA52
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12044,477,128 - 44,480,023 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2044,477,130 - 44,479,948 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2044,391,819 - 44,394,638 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02044,963,325 - 44,966,217 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2044,963,327 - 44,966,145 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12044,200,687 - 44,203,507 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02044,610,646 - 44,613,463 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02044,886,089 - 44,888,908 (-)NCBIUU_Cfam_GSD_1.0
Uba52
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118203,157,851 - 203,160,864 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365962,706,994 - 2,719,846 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365962,706,990 - 2,709,957 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UBA52
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl259,238,906 - 59,240,274 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1259,238,802 - 59,241,512 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2259,061,299 - 59,064,004 (+)NCBISscrofa10.2Sscrofa10.2susScr3
UBA52
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1617,040,127 - 17,043,569 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl617,040,064 - 17,045,737 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660742,294,542 - 2,298,341 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000027498   ⟹   ENSHGLP00000027257
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046249081,736,899 - 1,745,787 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000027499   ⟹   ENSHGLP00000027258
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046249081,740,988 - 1,748,652 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000027500   ⟹   ENSHGLP00000027259
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046249081,745,929 - 1,750,516 (+)Ensembl
RefSeq Acc Id: XM_004873379   ⟹   XP_004873436
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046249081,745,903 - 1,748,750 (+)NCBI
RefSeq Acc Id: XM_004873380   ⟹   XP_004873437
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046249081,745,990 - 1,748,750 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004873436 (Get FASTA)   NCBI Sequence Viewer  
  XP_004873437 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB16717 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000027259
  ENSHGLP00100047400
Reference Protein Sequences
RefSeq Acc Id: XP_004873436   ⟸   XM_004873379
- UniProtKB: G5C5A6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004873437   ⟸   XM_004873380
- UniProtKB: G5C5A6 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000027258   ⟸   ENSHGLT00000027499
RefSeq Acc Id: ENSHGLP00000027259   ⟸   ENSHGLT00000027500
RefSeq Acc Id: ENSHGLP00000027257   ⟸   ENSHGLT00000027498


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000019381 Ensembl, ENTREZGENE
  ENSHGLG00100044369 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000027500 ENTREZGENE
  ENSHGLT00100043007 UniProtKB/TrEMBL
Gene3D-CATH 4.10.1060.50 UniProtKB/TrEMBL
InterPro L40e_sf UniProtKB/TrEMBL
  Ribosomal_L40e UniProtKB/TrEMBL
  Ubiquitin-like_dom UniProtKB/TrEMBL
  Ubiquitin-like_domsf UniProtKB/TrEMBL
  Ubiquitin_CS UniProtKB/TrEMBL
  Ubiquitin_dom UniProtKB/TrEMBL
KEGG Report hgl:101699951 UniProtKB/TrEMBL
NCBI Gene Uba52 ENTREZGENE
PANTHER UBIQUITIN UniProtKB/TrEMBL
  UBIQUITIN-60S RIBOSOMAL PROTEIN L40 UniProtKB/TrEMBL
Pfam Ribosomal_L40e UniProtKB/TrEMBL
  ubiquitin UniProtKB/TrEMBL
PRINTS UBIQUITIN UniProtKB/TrEMBL
PROSITE UBIQUITIN_1 UniProtKB/TrEMBL
  UBIQUITIN_2 UniProtKB/TrEMBL
SMART Ribosomal_L40e UniProtKB/TrEMBL
  UBQ UniProtKB/TrEMBL
Superfamily-SCOP SSF54236 UniProtKB/TrEMBL
UniProt G5C5A6 ENTREZGENE, UniProtKB/TrEMBL