Rbm15b (RNA binding motif protein 15B) - Rat Genome Database

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Gene: Rbm15b (RNA binding motif protein 15B) Heterocephalus glaber
Analyze
Symbol: Rbm15b
Name: RNA binding motif protein 15B
RGD ID: 18934542
Description: ENCODES a protein that exhibits RNA binding (ortholog); INVOLVED IN dosage compensation by inactivation of X chromosome (ortholog); mRNA export from nucleus (ortholog); negative regulation of DNA-templated transcription (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN nuclear envelope (ortholog); nuclear speck (ortholog); nucleolus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: putative RNA-binding protein 15B
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247305,170,107 - 5,172,779 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247305,170,042 - 5,176,573 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Rbm15b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247305,170,107 - 5,172,779 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247305,170,042 - 5,176,573 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
RBM15B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38351,391,285 - 51,397,908 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl351,391,285 - 51,397,908 (+)EnsemblGRCh38hg38GRCh38
GRCh37351,428,716 - 51,435,339 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36351,403,771 - 51,410,379 (+)NCBINCBI36Build 36hg18NCBI36
Build 34351,403,770 - 51,410,374NCBI
Celera351,403,085 - 51,409,693 (+)NCBICelera
Cytogenetic Map3p21.2NCBI
HuRef351,485,926 - 51,492,566 (+)NCBIHuRef
CHM1_1351,380,607 - 51,387,247 (+)NCBICHM1_1
T2T-CHM13v2.0351,421,702 - 51,428,325 (+)NCBIT2T-CHM13v2.0
Rbm15b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399106,758,127 - 106,764,274 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9106,758,117 - 106,764,627 (-)EnsemblGRCm39 Ensembl
GRCm389106,880,928 - 106,887,075 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9106,880,918 - 106,887,428 (-)EnsemblGRCm38mm10GRCm38
MGSCv379106,786,316 - 106,789,331 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369106,613,444 - 106,616,504 (-)NCBIMGSCv36mm8
Celera9106,508,044 - 106,510,721 (-)NCBICelera
Cytogenetic Map9F1NCBI
cM Map957.98NCBI
Rbm15b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88116,422,309 - 116,425,374 (-)NCBIGRCr8
mRatBN7.28107,543,613 - 107,546,678 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8107,525,898 - 107,551,696 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8113,167,256 - 113,170,321 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08111,366,430 - 111,369,495 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08109,209,209 - 109,212,274 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08115,618,242 - 115,623,068 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8115,618,555 - 115,621,394 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08114,977,072 - 114,980,239 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48112,105,207 - 112,108,297 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18112,125,047 - 112,127,752 (-)NCBI
Celera8106,855,540 - 106,860,141 (-)NCBICelera
Cytogenetic Map8q32NCBI
Rbm15b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555323,080,207 - 3,082,312 (+)NCBIChiLan1.0ChiLan1.0
RBM15B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2251,375,717 - 51,379,324 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1351,380,493 - 51,384,104 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0351,321,963 - 51,325,092 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1352,555,251 - 52,562,454 (+)NCBIpanpan1.1PanPan1.1panPan2
RBM15B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12038,191,079 - 38,194,150 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2038,191,439 - 38,192,730 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2038,167,076 - 38,173,666 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02038,536,384 - 38,542,974 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2038,540,272 - 38,542,974 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12037,899,776 - 37,906,363 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02038,304,089 - 38,310,679 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02038,593,727 - 38,600,317 (-)NCBIUU_Cfam_GSD_1.0
Rbm15b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560266,019,613 - 66,022,323 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365292,780,110 - 2,782,455 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365292,780,110 - 2,782,775 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RBM15B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1333,664,472 - 33,667,153 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11333,664,387 - 33,671,047 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21336,890,007 - 36,893,188 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RBM15B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12212,732,260 - 12,735,401 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2212,732,396 - 12,735,068 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041154,228,251 - 154,234,777 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_004834164 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01000233 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSHGLT00000029092   ⟹   ENSHGLP00000028572
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247305,170,107 - 5,172,779 (+)Ensembl
RefSeq Acc Id: XM_004834164   ⟹   XP_004834221
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247305,170,042 - 5,176,573 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004834221 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000028572
Reference Protein Sequences
RefSeq Acc Id: XP_004834221   ⟸   XM_004834164
RefSeq Acc Id: ENSHGLP00000028572   ⟸   ENSHGLT00000029092


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000020882 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000029092 ENTREZGENE
NCBI Gene Rbm15b ENTREZGENE