E2f5 (E2F transcription factor 5) - Rat Genome Database

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Gene: E2f5 (E2F transcription factor 5) Heterocephalus glaber
Analyze
Symbol: E2f5
Name: E2F transcription factor 5
RGD ID: 18934492
Description: ENCODES a protein that exhibits DNA-binding transcription activator activity (ortholog); DNA-binding transcription factor activity (ortholog); sequence-specific DNA binding (ortholog); INVOLVED IN animal organ morphogenesis (ortholog); regulation of DNA-templated transcription (ortholog); ASSOCIATED WITH Disease Progression (ortholog); genetic disease (ortholog); hydrocephalus (ortholog); FOUND IN cytoplasm (ortholog); fibrillar center (ortholog); intracellular membrane-bounded organelle (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: transcription factor E2F5
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247446,468,512 - 6,492,356 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
E2f5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247446,468,512 - 6,492,356 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
E2F5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38885,177,154 - 85,214,518 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl885,177,154 - 85,217,158 (+)EnsemblGRCh38hg38GRCh38
GRCh37886,089,389 - 86,126,753 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36886,276,871 - 86,314,005 (+)NCBINCBI36Build 36hg18NCBI36
Build 34886,276,876 - 86,314,002NCBI
Celera882,094,939 - 82,131,798 (+)NCBICelera
Cytogenetic Map8q21.2NCBI
HuRef881,583,766 - 81,620,799 (+)NCBIHuRef
CHM1_1886,141,195 - 86,178,340 (+)NCBICHM1_1
T2T-CHM13v2.0885,615,754 - 85,653,117 (+)NCBIT2T-CHM13v2.0
E2f5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39314,638,370 - 14,671,369 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl314,643,701 - 14,671,369 (+)EnsemblGRCm39 Ensembl
GRCm38314,578,602 - 14,606,309 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl314,578,641 - 14,606,309 (+)EnsemblGRCm38mm10GRCm38
MGSCv37314,578,671 - 14,606,309 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36314,555,415 - 14,583,053 (+)NCBIMGSCv36mm8
Celera314,586,826 - 14,614,448 (+)NCBICelera
Cytogenetic Map3A1NCBI
cM Map33.1NCBI
E2f5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8288,718,567 - 88,734,143 (-)NCBIGRCr8
mRatBN7.2286,997,331 - 87,012,908 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl286,997,332 - 87,012,990 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx293,326,917 - 93,342,470 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0291,447,920 - 91,463,473 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0286,504,739 - 86,520,292 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0288,350,764 - 88,366,913 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl288,351,361 - 88,366,115 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02108,121,172 - 108,137,052 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4288,346,236 - 88,361,733 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1288,291,198 - 88,306,581 (-)NCBI
Celera282,587,783 - 82,594,655 (-)NCBICelera
Cytogenetic Map2q23NCBI
E2f5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554173,145,570 - 3,155,233 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554173,131,282 - 3,155,872 (+)NCBIChiLan1.0ChiLan1.0
E2F5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27100,914,168 - 100,950,576 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1876,546,751 - 76,583,160 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0881,703,423 - 81,739,827 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1883,314,197 - 83,350,220 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl883,314,176 - 83,350,220 (+)Ensemblpanpan1.1panPan2
E2F5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12931,745,211 - 31,754,940 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2931,746,384 - 31,754,265 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2932,010,179 - 32,037,439 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02931,876,597 - 31,904,670 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2931,876,391 - 31,904,682 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12931,931,443 - 31,958,633 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02931,949,625 - 31,977,358 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02932,333,466 - 32,361,295 (+)NCBIUU_Cfam_GSD_1.0
E2f5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530347,639,377 - 47,667,600 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936544125,360 - 152,670 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936544124,243 - 153,325 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
E2F5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl451,478,050 - 51,512,718 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1451,478,399 - 51,512,617 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2456,493,996 - 56,528,084 (-)NCBISscrofa10.2Sscrofa10.2susScr3
E2F5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1880,542,390 - 80,587,888 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl880,542,580 - 80,587,226 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603960,512,505 - 60,557,770 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_004841989   ⟹   XP_004842046
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247446,468,512 - 6,492,356 (-)NCBI
RefSeq Acc Id: XM_004841990   ⟹   XP_004842047
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247446,468,512 - 6,492,356 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004842046 (Get FASTA)   NCBI Sequence Viewer  
  XP_004842047 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000008056
Reference Protein Sequences
RefSeq Acc Id: XP_004842047   ⟸   XM_004841990
- Peptide Label: isoform X2
RefSeq Acc Id: XP_004842046   ⟸   XM_004841989
- Peptide Label: isoform X1


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000005836 ENTREZGENE
Ensembl Transcript ENSHGLT00000008144 ENTREZGENE
NCBI Gene E2f5 ENTREZGENE