Zbed3 (zinc finger BED-type containing 3) - Rat Genome Database

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Gene: Zbed3 (zinc finger BED-type containing 3) Heterocephalus glaber
Analyze
Symbol: Zbed3
Name: zinc finger BED-type containing 3
RGD ID: 18934356
Description: INVOLVED IN actin filament organization (ortholog); endoplasmic reticulum localization (ortholog); establishment of spindle localization (ortholog); ASSOCIATED WITH genetic disease (ortholog); Hermansky-Pudlak syndrome 2 (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); extracellular space (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: zinc finger BED domain-containing protein 3
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248691,586,477 - 1,602,312 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Zbed3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248691,586,477 - 1,602,312 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
ZBED3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38577,072,072 - 77,087,285 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl577,072,072 - 77,087,285 (-)EnsemblGRCh38hg38GRCh38
GRCh37576,367,897 - 76,383,110 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36576,408,288 - 76,418,786 (-)NCBINCBI36Build 36hg18NCBI36
Build 34576,408,287 - 76,418,786NCBI
Celera572,266,829 - 72,277,326 (-)NCBICelera
Cytogenetic Map5q13.3NCBI
HuRef571,579,165 - 71,589,588 (-)NCBIHuRef
CHM1_1575,805,933 - 75,816,430 (-)NCBICHM1_1
T2T-CHM13v2.0577,553,725 - 77,568,916 (-)NCBIT2T-CHM13v2.0
Zbed3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391395,460,113 - 95,474,350 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1395,460,120 - 95,474,349 (+)EnsemblGRCm39 Ensembl
GRCm381395,323,605 - 95,337,842 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1395,323,612 - 95,337,841 (+)EnsemblGRCm38mm10GRCm38
MGSCv371396,095,192 - 96,107,796 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361396,425,936 - 96,438,540 (+)NCBIMGSCv36mm8
Celera1398,946,599 - 98,959,202 (+)NCBICelera
Cytogenetic Map13D1NCBI
cM Map1349.38NCBI
Zbed3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8228,323,968 - 28,334,910 (+)NCBIGRCr8
mRatBN7.2226,587,620 - 26,600,177 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl226,587,572 - 26,600,386 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx233,621,670 - 33,632,645 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0231,721,909 - 31,732,879 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0226,543,495 - 26,554,433 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0225,039,506 - 25,052,129 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl225,041,185 - 25,052,127 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0244,197,989 - 44,210,611 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4225,692,721 - 25,703,663 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1225,613,089 - 25,624,032 (+)NCBI
Celera222,655,097 - 22,666,039 (+)NCBICelera
Cytogenetic Map2q12NCBI
ZBED3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2438,210,911 - 38,225,966 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1536,364,538 - 36,379,593 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0538,214,260 - 38,229,373 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1538,740,437 - 38,750,367 (+)NCBIpanpan1.1PanPan1.1panPan2
ZBED3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha330,871,335 - 30,871,910 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0329,550,948 - 29,551,520 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1329,487,671 - 29,488,243 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0329,468,575 - 29,469,146 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0329,837,639 - 29,838,211 (+)NCBIUU_Cfam_GSD_1.0
Zbed3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213185,722,467 - 185,734,770 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365495,127,358 - 5,133,984 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365495,124,079 - 5,136,873 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZBED3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1285,945,357 - 85,958,452 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2287,565,326 - 87,574,064 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ZBED3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1471,320,447 - 71,331,662 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl471,321,665 - 71,322,360 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604920,155,697 - 20,169,999 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_004870176   ⟹   XP_004870233
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248691,586,477 - 1,602,312 (-)NCBI
RefSeq Acc Id: XM_021248568   ⟹   XP_021104227
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248691,586,477 - 1,594,526 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004870233 (Get FASTA)   NCBI Sequence Viewer  
  XP_021104227 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_004870233   ⟸   XM_004870176
RefSeq Acc Id: XP_021104227   ⟸   XM_021248568


Additional Information

Database Acc Id Source(s)
NCBI Gene Zbed3 ENTREZGENE