Snrnp35 (small nuclear ribonucleoprotein U11/U12 subunit 35) - Rat Genome Database

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Gene: Snrnp35 (small nuclear ribonucleoprotein U11/U12 subunit 35) Heterocephalus glaber
Analyze
Symbol: Snrnp35
Name: small nuclear ribonucleoprotein U11/U12 subunit 35
RGD ID: 18934253
Description: ENCODES a protein that exhibits mRNA binding (inferred); RNA binding (inferred); snRNA binding (inferred); INVOLVED IN mRNA splicing, via spliceosome (inferred); ASSOCIATED WITH genetic disease (ortholog); FOUND IN nucleolus (inferred); nucleus (inferred); precatalytic spliceosome (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: U11/U12 small nuclear ribonucleoprotein 35 kDa protein
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474723,328,217 - 23,332,765 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474723,328,492 - 23,332,771 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Snrnp35
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474723,328,217 - 23,332,765 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474723,328,492 - 23,332,771 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
SNRNP35
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812123,458,139 - 123,473,154 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12123,458,088 - 123,473,154 (+)EnsemblGRCh38hg38GRCh38
GRCh3712123,942,686 - 123,957,701 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3612122,508,604 - 122,516,894 (+)NCBINCBI36Build 36hg18NCBI36
Celera12123,538,515 - 123,546,844 (+)NCBICelera
Cytogenetic Map12q24.31NCBI
HuRef12120,904,066 - 120,912,393 (+)NCBIHuRef
CHM1_112123,757,397 - 123,765,683 (+)NCBICHM1_1
T2T-CHM13v2.012123,457,038 - 123,472,057 (+)NCBIT2T-CHM13v2.0
Snrnp35
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395124,621,099 - 124,631,649 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5124,621,197 - 124,629,187 (+)EnsemblGRCm39 Ensembl
GRCm385124,483,081 - 124,493,586 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5124,483,134 - 124,491,124 (+)EnsemblGRCm38mm10GRCm38
MGSCv375124,933,164 - 124,941,131 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365124,743,773 - 124,751,740 (+)NCBIMGSCv36mm8
Celera5121,556,494 - 121,564,461 (+)NCBICelera
Cytogenetic Map5FNCBI
cM Map563.61NCBI
Snrnp35
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81237,773,052 - 37,781,635 (-)NCBIGRCr8
mRatBN7.21232,112,032 - 32,119,829 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1232,110,993 - 32,122,660 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1233,290,899 - 33,298,200 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01233,902,230 - 33,909,531 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01232,954,096 - 32,961,397 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01237,531,082 - 37,538,823 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1237,531,095 - 37,538,403 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01239,401,200 - 39,408,927 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41233,224,503 - 33,231,813 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11233,087,892 - 33,095,201 (-)NCBI
Celera1233,802,231 - 33,809,541 (-)NCBICelera
Cytogenetic Map12q15NCBI
Snrnp35
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554825,457,250 - 5,462,225 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554825,457,159 - 5,461,694 (-)NCBIChiLan1.0ChiLan1.0
SNRNP35
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210131,497,764 - 131,551,377 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112131,494,141 - 131,547,753 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v012121,053,065 - 121,061,851 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112125,280,601 - 125,290,266 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12125,282,666 - 125,290,266 (+)Ensemblpanpan1.1panPan2
Snrnp35
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118158,176,966 - 158,181,909 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365581,297,550 - 1,302,283 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365581,297,517 - 1,302,410 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SNRNP35
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1429,471,429 - 29,477,011 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11429,471,674 - 29,477,051 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21431,166,493 - 31,169,705 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SNRNP35
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111118,789,920 - 118,798,820 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl11118,797,972 - 118,798,712 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037126,483,931 - 126,493,340 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000025433   ⟹   ENSHGLP00000025211
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462474723,328,217 - 23,332,765 (+)Ensembl
RefSeq Acc Id: XM_004843954   ⟹   XP_004844011
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474723,328,492 - 23,332,771 (+)NCBI
RefSeq Acc Id: XM_021257615   ⟹   XP_021113274
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474723,329,108 - 23,332,771 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004844011 (Get FASTA)   NCBI Sequence Viewer  
  XP_021113274 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB01479 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000025211
  ENSHGLP00100037181
  ENSHGLP00100039798
Reference Protein Sequences
RefSeq Acc Id: XP_004844011   ⟸   XM_004843954
- UniProtKB: G5AWS8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021113274   ⟸   XM_021257615
- UniProtKB: G5AWS8 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000025211   ⟸   ENSHGLT00000025433


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000017961 Ensembl, ENTREZGENE
  ENSHGLG00100019252 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000025433 ENTREZGENE
  ENSHGLT00100055809 UniProtKB/TrEMBL
  ENSHGLT00100068723 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.330 UniProtKB/TrEMBL
InterPro Nucleotide-bd_a/b_plait_sf UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/TrEMBL
  RRM_dom UniProtKB/TrEMBL
  snRNP35_RRM UniProtKB/TrEMBL
NCBI Gene Snrnp35 ENTREZGENE
PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD UniProtKB/TrEMBL
  U11_U12 SMALL NUCLEAR RIBONUCLEOPROTEIN 35 KDA PROTEIN UniProtKB/TrEMBL
Pfam RRM_1 UniProtKB/TrEMBL
PROSITE RRM UniProtKB/TrEMBL
SMART RRM UniProtKB/TrEMBL
Superfamily-SCOP SSF54928 UniProtKB/TrEMBL
UniProt G5AWS8 ENTREZGENE, UniProtKB/TrEMBL