Trim42 (tripartite motif containing 42) - Rat Genome Database

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Gene: Trim42 (tripartite motif containing 42) Heterocephalus glaber
Analyze
Symbol: Trim42
Name: tripartite motif containing 42
RGD ID: 18934252
Description: ENCODES a protein that exhibits metal ion binding (inferred); zinc ion binding (inferred); ASSOCIATED WITH genetic disease (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Tripartite motif-containing protein 42
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473017,299,728 - 17,338,835 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473017,299,792 - 17,330,817 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:22301074  


Genomics

Comparative Map Data
Trim42
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473017,299,728 - 17,338,835 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473017,299,792 - 17,330,817 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
TRIM42
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383140,678,064 - 140,701,150 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3140,678,064 - 140,701,150 (+)EnsemblGRCh38hg38GRCh38
GRCh373140,396,906 - 140,419,992 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363141,879,571 - 141,902,681 (+)NCBINCBI36Build 36hg18NCBI36
Build 343141,879,578 - 141,902,689NCBI
Celera3138,820,504 - 138,843,650 (+)NCBICelera
Cytogenetic Map3q23NCBI
HuRef3137,770,829 - 137,793,927 (+)NCBIHuRef
CHM1_13140,360,480 - 140,383,594 (+)NCBICHM1_1
T2T-CHM13v2.03143,425,371 - 143,448,461 (+)NCBIT2T-CHM13v2.0
Trim42
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39997,231,615 - 97,252,011 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl997,231,615 - 97,252,011 (-)EnsemblGRCm39 Ensembl
GRCm38997,349,562 - 97,369,958 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl997,349,562 - 97,369,958 (-)EnsemblGRCm38mm10GRCm38
MGSCv37997,249,981 - 97,270,377 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36997,158,918 - 97,179,310 (-)NCBIMGSCv36mm8
Celera996,903,472 - 96,923,707 (-)NCBICelera
Cytogenetic Map9E3.3NCBI
cM Map951.06NCBI
Trim42
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88106,781,847 - 106,802,764 (-)NCBIGRCr8
mRatBN7.2897,902,349 - 97,923,268 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl897,902,353 - 97,923,268 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8103,569,393 - 103,590,260 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08101,768,650 - 101,789,519 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0899,607,578 - 99,628,445 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08105,205,041 - 105,226,541 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8105,204,993 - 105,226,588 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08104,651,862 - 104,672,890 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera897,337,231 - 97,358,211 (-)NCBICelera
Cytogenetic Map8q31NCBI
Trim42
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555084,959,416 - 4,984,186 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555084,959,495 - 4,984,166 (-)NCBIChiLan1.0ChiLan1.0
TRIM42
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22138,590,714 - 138,613,963 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13138,595,444 - 138,618,693 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03137,713,992 - 137,737,130 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13145,312,284 - 145,335,422 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3145,312,284 - 145,335,422 (+)Ensemblpanpan1.1panPan2
TRIM42
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12336,712,142 - 36,761,359 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2336,712,334 - 36,761,059 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2336,705,910 - 36,755,237 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02337,242,990 - 37,292,183 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2337,242,994 - 37,292,209 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12336,924,325 - 36,973,630 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02336,998,578 - 37,047,771 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02337,241,084 - 37,290,644 (+)NCBIUU_Cfam_GSD_1.0
Trim42
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560275,916,378 - 75,939,765 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365402,656,256 - 2,679,541 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365402,656,256 - 2,679,541 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRIM42
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1381,539,067 - 81,565,317 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11381,537,589 - 81,567,393 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21389,381,583 - 89,429,877 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TRIM42
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11549,859,731 - 49,883,086 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1549,869,281 - 49,882,176 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604122,813,765 - 22,837,201 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000018801   ⟹   ENSHGLP00000018616
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462473017,299,728 - 17,338,835 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000018802   ⟹   ENSHGLP00000018617
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462473017,299,728 - 17,330,872 (+)Ensembl
RefSeq Acc Id: XM_004834346   ⟹   XP_004834403
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473017,299,792 - 17,330,817 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004834403 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHA98976 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000018617
GenBank Protein JAN97141 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_004834403   ⟸   XM_004834346
- UniProtKB: A0A0N8ESQ9 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000018617   ⟸   ENSHGLT00000018802
RefSeq Acc Id: ENSHGLP00000018616   ⟸   ENSHGLT00000018801


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000013325 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000018802 ENTREZGENE
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
  3.30.40.10 UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
InterPro COS_domain UniProtKB/TrEMBL
  FN3_dom UniProtKB/TrEMBL
  FN3_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  TRIM42_RING-HC UniProtKB/TrEMBL
  Znf_B-box UniProtKB/TrEMBL
  Znf_RING UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
  Znf_RING_CS UniProtKB/TrEMBL
NCBI Gene Trim42 ENTREZGENE
PANTHER B-BOX DOMAIN CONTAINING UniProtKB/TrEMBL
  TRIPARTITE MOTIF-CONTAINING PROTEIN 42 UniProtKB/TrEMBL
Pfam fn3 UniProtKB/TrEMBL
  zf-B_box UniProtKB/TrEMBL
PROSITE COS UniProtKB/TrEMBL
  FN3 UniProtKB/TrEMBL
  ZF_BBOX UniProtKB/TrEMBL
  ZF_RING_1 UniProtKB/TrEMBL
  ZF_RING_2 UniProtKB/TrEMBL
SMART BBOX UniProtKB/TrEMBL
  FN3 UniProtKB/TrEMBL
  RING UniProtKB/TrEMBL
Superfamily-SCOP B-box zinc-binding domain UniProtKB/TrEMBL
  RING/U-box UniProtKB/TrEMBL
  SSF49265 UniProtKB/TrEMBL
UniProt A0A0N8ESQ9 ENTREZGENE, UniProtKB/TrEMBL