Ankrd49 (ankyrin repeat domain 49) - Rat Genome Database

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Gene: Ankrd49 (ankyrin repeat domain 49) Heterocephalus glaber
Analyze
Symbol: Ankrd49
Name: ankyrin repeat domain 49
RGD ID: 18934045
Description: INVOLVED IN positive regulation of DNA-templated transcription (inferred); ASSOCIATED WITH ataxia telangiectasia (ortholog); genetic disease (ortholog); intellectual disability (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Ankyrin repeat domain-containing protein 49
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473539,153,975 - 39,159,531 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:22301074  


Genomics

Comparative Map Data
Ankrd49
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473539,153,975 - 39,159,531 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
ANKRD49
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381194,493,984 - 94,499,578 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1194,493,979 - 94,499,578 (+)EnsemblGRCh38hg38GRCh38
GRCh371194,227,150 - 94,232,744 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361193,866,801 - 93,872,392 (+)NCBINCBI36Build 36hg18NCBI36
Celera1191,514,963 - 91,520,554 (+)NCBICelera
Cytogenetic Map11q21NCBI
HuRef1190,292,648 - 90,298,239 (+)NCBIHuRef
CHM1_11194,110,168 - 94,115,759 (+)NCBICHM1_1
T2T-CHM13v2.01194,501,024 - 94,506,618 (+)NCBIT2T-CHM13v2.0
Ankrd49
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39914,690,916 - 14,695,869 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl914,690,914 - 14,696,152 (-)EnsemblGRCm39 Ensembl
GRCm38914,779,620 - 14,784,573 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl914,779,618 - 14,784,856 (-)EnsemblGRCm38mm10GRCm38
MGSCv37914,584,642 - 14,587,408 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36914,530,591 - 14,533,357 (-)NCBIMGSCv36mm8
Celera912,060,935 - 12,063,701 (-)NCBICelera
Cytogenetic Map9A2NCBI
cM Map94.33NCBI
Ankrd49
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8819,908,968 - 19,913,656 (-)NCBIGRCr8
mRatBN7.2811,627,512 - 11,632,200 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl811,627,518 - 11,632,207 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx815,612,322 - 15,617,018 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0813,910,067 - 13,914,763 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0811,885,651 - 11,890,344 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0813,299,556 - 13,304,244 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl813,299,561 - 13,304,244 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0813,240,202 - 13,244,890 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4811,582,729 - 11,587,414 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1811,584,027 - 11,585,732 (-)NCBI
Celera813,097,199 - 13,101,884 (-)NCBICelera
Cytogenetic Map8q12NCBI
ANKRD49
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2995,341,191 - 95,346,823 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11196,432,682 - 96,441,112 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01189,500,796 - 89,506,436 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11192,986,088 - 92,991,713 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1192,986,224 - 92,991,713 (+)Ensemblpanpan1.1panPan2
ANKRD49
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1216,443,330 - 6,449,676 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl216,443,844 - 6,446,591 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha216,454,014 - 6,460,370 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0216,623,991 - 6,630,353 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl216,623,991 - 6,630,255 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1216,410,819 - 6,417,174 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0216,473,886 - 6,480,248 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0216,522,972 - 6,529,328 (-)NCBIUU_Cfam_GSD_1.0
Ankrd49
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494779,424,965 - 79,430,472 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936674460,456 - 466,410 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936674459,976 - 466,366 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ANKRD49
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl926,634,708 - 26,642,512 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1926,634,616 - 26,642,520 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2930,388,480 - 30,396,511 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ANKRD49
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1185,694,327 - 85,700,585 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl185,694,365 - 85,699,352 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604340,073,785 - 40,080,095 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


RefSeq Acc Id: XM_004838049   ⟹   XP_004838106
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473539,153,975 - 39,159,531 (+)NCBI
RefSeq Acc Id: XM_004838050   ⟹   XP_004838107
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473539,154,040 - 39,159,531 (+)NCBI
RefSeq Acc Id: XM_021252668   ⟹   XP_021108327
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473539,154,104 - 39,159,531 (+)NCBI
RefSeq Acc Id: XM_021252669   ⟹   XP_021108328
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473539,154,091 - 39,159,531 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004838106 (Get FASTA)   NCBI Sequence Viewer  
  XP_004838107 (Get FASTA)   NCBI Sequence Viewer  
  XP_021108327 (Get FASTA)   NCBI Sequence Viewer  
  XP_021108328 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB07146 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000019598
  ENSHGLP00100003995
RefSeq Acc Id: XP_004838106   ⟸   XM_004838049
- UniProtKB: G5BCY5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004838107   ⟸   XM_004838050
- UniProtKB: G5BCY5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021108328   ⟸   XM_021252669
- UniProtKB: G5BCY5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021108327   ⟸   XM_021252668
- UniProtKB: G5BCY5 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000014039 ENTREZGENE
  ENSHGLG00100003047 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000019794 ENTREZGENE
  ENSHGLT00100004059 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.20 UniProtKB/TrEMBL
InterPro Ankyrin_rpt UniProtKB/TrEMBL
  Ankyrin_rpt-contain_sf UniProtKB/TrEMBL
KEGG Report hgl:101709563 UniProtKB/TrEMBL
NCBI Gene Ankrd49 ENTREZGENE
PANTHER LETHAL (2) 35BE UniProtKB/TrEMBL
  MYOTROPHIN UniProtKB/TrEMBL
Pfam Ank UniProtKB/TrEMBL
  Ank_4 UniProtKB/TrEMBL
PRINTS ANKYRIN UniProtKB/TrEMBL
PROSITE ANK_REP_REGION UniProtKB/TrEMBL
  ANK_REPEAT UniProtKB/TrEMBL
SMART ANK UniProtKB/TrEMBL
Superfamily-SCOP SSF48403 UniProtKB/TrEMBL
UniProt G5BCY5 ENTREZGENE, UniProtKB/TrEMBL