Zc3hc1 (zinc finger C3HC-type containing 1) - Rat Genome Database

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Gene: Zc3hc1 (zinc finger C3HC-type containing 1) Heterocephalus glaber
Analyze
Symbol: Zc3hc1
Name: zinc finger C3HC-type containing 1
RGD ID: 18933824
Description: ENCODES a protein that exhibits metal ion binding (inferred); protein kinase binding (inferred); zinc ion binding (inferred); INVOLVED IN negative regulation of extrinsic apoptotic signaling pathway in absence of ligand (ortholog); ASSOCIATED WITH coronary artery disease (ortholog); Coronary Disease (ortholog); genetic disease (ortholog); FOUND IN nuclear membrane (inferred); nucleoplasm (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: nuclear-interacting partner of ALK
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247836,218,209 - 6,243,694 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247836,218,172 - 6,243,694 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Zc3hc1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247836,218,209 - 6,243,694 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247836,218,172 - 6,243,694 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
ZC3HC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387130,018,286 - 130,051,451 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7130,018,287 - 130,051,451 (-)EnsemblGRCh38hg38GRCh38
GRCh377129,658,126 - 129,691,291 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 367129,445,362 - 129,478,469 (-)NCBINCBI36Build 36hg18NCBI36
Build 347129,252,083 - 129,285,165NCBI
Celera7124,453,864 - 124,486,984 (-)NCBICelera
Cytogenetic Map7q32.2NCBI
HuRef7124,019,510 - 124,053,569 (-)NCBIHuRef
CHM1_17129,591,677 - 129,624,778 (-)NCBICHM1_1
T2T-CHM13v2.07131,331,648 - 131,364,836 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27129,042,758 - 129,076,662 (-)NCBI
Zc3hc1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39630,366,383 - 30,391,019 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl630,366,379 - 30,391,027 (-)EnsemblGRCm39 Ensembl
GRCm38630,366,384 - 30,391,049 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl630,366,380 - 30,391,028 (-)EnsemblGRCm38mm10GRCm38
MGSCv37630,316,388 - 30,341,010 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36630,316,398 - 30,341,020 (-)NCBIMGSCv36mm8
Celera630,376,373 - 30,400,991 (-)NCBICelera
Cytogenetic Map6A3.3NCBI
cM Map612.52NCBI
Zc3hc1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8459,957,402 - 59,979,336 (-)NCBIGRCr8
mRatBN7.2458,989,989 - 59,011,925 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl458,989,987 - 59,011,933 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx463,968,069 - 63,989,945 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0459,884,248 - 59,906,124 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0458,286,162 - 58,308,039 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0457,684,678 - 57,706,613 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl457,684,678 - 57,706,613 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0457,445,868 - 57,468,238 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4457,280,829 - 57,302,839 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera454,089,110 - 54,111,129 (-)NCBICelera
Cytogenetic Map4q22NCBI
Zc3hc1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495547910,692,738 - 10,717,228 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495547910,692,438 - 10,717,368 (-)NCBIChiLan1.0ChiLan1.0
ZC3HC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26166,838,557 - 166,873,418 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1718,848,802 - 18,883,663 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07121,983,549 - 122,018,106 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17134,502,334 - 134,536,401 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7134,502,334 - 134,536,401 (-)Ensemblpanpan1.1panPan2
ZC3HC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1146,831,017 - 6,852,852 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha146,514,731 - 6,536,790 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0146,591,330 - 6,613,580 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl146,591,783 - 6,613,577 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1146,796,495 - 6,819,419 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0146,539,839 - 6,562,164 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0146,684,657 - 6,706,699 (+)NCBIUU_Cfam_GSD_1.0
Zc3hc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511825,031,165 - 25,056,533 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365795,163,771 - 5,189,130 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZC3HC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1818,740,845 - 18,761,718 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11818,740,817 - 18,761,515 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21819,802,362 - 19,814,907 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ZC3HC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12198,646,115 - 98,680,650 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660424,721,482 - 4,756,137 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000007044   ⟹   ENSHGLP00000006960
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247836,218,209 - 6,243,694 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000007045   ⟹   ENSHGLP00000006961
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247836,218,214 - 6,243,357 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000007046   ⟹   ENSHGLP00000006962
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247836,218,214 - 6,240,452 (+)Ensembl
RefSeq Acc Id: XM_004856338   ⟹   XP_004856395
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247836,218,172 - 6,243,694 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004856395 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000006960
  ENSHGLP00100048188
GenBank Protein JAN97841 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_004856395   ⟸   XM_004856338
- UniProtKB: A0A0P6J5H7 (UniProtKB/TrEMBL),   G5BH81 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000006961   ⟸   ENSHGLT00000007045
RefSeq Acc Id: ENSHGLP00000006960   ⟸   ENSHGLT00000007044
RefSeq Acc Id: ENSHGLP00000006962   ⟸   ENSHGLT00000007046


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000005085 Ensembl, ENTREZGENE
  ENSHGLG00100011395 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000007044 ENTREZGENE
  ENSHGLT00100069184 UniProtKB/TrEMBL
InterPro NIPA/Rsm1 UniProtKB/TrEMBL
  Znf_C3HC-like UniProtKB/TrEMBL
KEGG Report hgl:101701762 UniProtKB/TrEMBL
NCBI Gene Zc3hc1 ENTREZGENE
PANTHER NUCLEAR-INTERACTING PARTNER OF ALK UniProtKB/TrEMBL
  NUCLEAR-INTERACTING PARTNER OF ALK UniProtKB/TrEMBL
Pfam Rsm1 UniProtKB/TrEMBL
  zf-C3HC UniProtKB/TrEMBL
UniProt A0A0P6J5H7 ENTREZGENE, UniProtKB/TrEMBL
  G5BH81 ENTREZGENE, UniProtKB/TrEMBL