Mrpl50 (mitochondrial ribosomal protein L50) - Rat Genome Database

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Gene: Mrpl50 (mitochondrial ribosomal protein L50) Heterocephalus glaber
Analyze
Symbol: Mrpl50
Name: mitochondrial ribosomal protein L50
RGD ID: 18933327
Description: ASSOCIATED WITH fructose-1,6-bisphosphatase deficiency (ortholog); genetic disease (ortholog); hereditary fructose intolerance syndrome (ortholog); FOUND IN cytosol (inferred); mitochondrial large ribosomal subunit (inferred); mitochondrion (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 39S ribosomal protein L50, mitochondrial
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247589,901,143 - 9,916,504 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247589,901,076 - 9,915,639 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Mrpl50
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247589,901,143 - 9,916,504 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247589,901,076 - 9,915,639 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
MRPL50
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389101,387,633 - 101,398,618 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9101,387,633 - 101,398,618 (-)EnsemblGRCh38hg38GRCh38
GRCh379104,149,915 - 104,160,900 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369103,192,070 - 103,200,717 (-)NCBINCBI36Build 36hg18NCBI36
Build 349101,231,803 - 101,240,451NCBI
Celera974,665,854 - 74,674,524 (-)NCBICelera
Cytogenetic Map9q31.1NCBI
HuRef973,751,699 - 73,760,369 (-)NCBIHuRef
CHM1_19104,298,663 - 104,307,332 (-)NCBICHM1_1
T2T-CHM13v2.09113,559,613 - 113,570,593 (-)NCBIT2T-CHM13v2.0
Mrpl50
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39449,512,597 - 49,521,083 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl449,512,596 - 49,521,093 (-)EnsemblGRCm39 Ensembl
GRCm38449,512,597 - 49,521,083 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl449,512,596 - 49,521,093 (-)EnsemblGRCm38mm10GRCm38
MGSCv37449,525,469 - 49,533,955 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36449,533,697 - 49,542,183 (-)NCBIMGSCv36mm8
Celera449,540,851 - 49,549,337 (-)NCBICelera
Cytogenetic Map4B1NCBI
cM Map426.54NCBI
Mrpl50
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8568,662,933 - 68,668,087 (-)NCBIGRCr8
mRatBN7.2563,867,437 - 63,872,591 (-)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_Utx565,798,163 - 65,803,310 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0567,617,495 - 67,622,642 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0567,586,875 - 67,592,022 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0564,784,164 - 64,789,318 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl564,784,170 - 64,789,318 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0569,275,573 - 69,280,730 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4566,261,553 - 66,266,710 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1566,267,116 - 66,271,803 (-)NCBI
Celera563,735,392 - 63,740,545 (+)NCBICelera
Cytogenetic Map5q22NCBI
Mrpl50
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541924,416,556 - 24,425,288 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541924,416,556 - 24,425,288 (+)NCBIChiLan1.0ChiLan1.0
MRPL50
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21137,963,998 - 37,974,042 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1937,966,381 - 37,976,417 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0972,598,030 - 72,607,297 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19100,592,607 - 100,601,435 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9100,592,607 - 100,601,435 (-)Ensemblpanpan1.1panPan2
MRPL50
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11158,126,242 - 58,129,171 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1158,126,547 - 58,129,123 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1156,571,953 - 56,574,915 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01159,263,004 - 59,265,966 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1159,263,072 - 59,265,911 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11157,772,750 - 57,775,710 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01157,785,796 - 57,788,783 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01158,483,375 - 58,486,338 (-)NCBIUU_Cfam_GSD_1.0
Mrpl50
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947173,010,718 - 173,016,859 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365249,558,835 - 9,564,452 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365249,558,298 - 9,564,414 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MRPL50
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1243,100,372 - 243,107,084 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11243,100,365 - 243,106,831 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21271,655,691 - 271,660,590 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MRPL50
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11238,042,285 - 38,050,896 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1238,042,317 - 38,050,527 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660354,503,857 - 4,511,616 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000006212   ⟹   ENSHGLP00000006137
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247589,901,143 - 9,916,504 (+)Ensembl
RefSeq Acc Id: XM_004848212   ⟹   XP_004848269
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247589,901,076 - 9,915,639 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004848269 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHA98532 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000006137
  ENSHGLP00100055069
GenBank Protein JAN96683 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_004848269   ⟸   XM_004848212
- UniProtKB: G5ANC2 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000006137   ⟸   ENSHGLT00000006212


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000004483 Ensembl, ENTREZGENE
  ENSHGLG00100034649 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000006212 ENTREZGENE
  ENSHGLT00100065301 UniProtKB/TrEMBL
InterPro Ribosomal_L50_mt UniProtKB/TrEMBL
KEGG Report hgl:101714730 UniProtKB/TrEMBL
NCBI Gene Mrpl50 ENTREZGENE
PANTHER 39S RIBOSOMAL PROTEIN L50, MITOCHONDRIAL UniProtKB/TrEMBL
  PTHR31542 UniProtKB/TrEMBL
Pfam Ribosomal_L50 UniProtKB/TrEMBL
UniProt G5ANC2 ENTREZGENE, UniProtKB/TrEMBL