Znf496 (zinc finger protein 496) - Rat Genome Database

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Gene: Znf496 (zinc finger protein 496) Heterocephalus glaber
Analyze
Symbol: Znf496
Name: zinc finger protein 496
RGD ID: 18933268
Description: ENCODES a protein that exhibits DNA binding (ortholog); INVOLVED IN positive regulation of DNA-templated transcription (ortholog); ASSOCIATED WITH developmental and epileptic encephalopathy 54 (ortholog); gastrointestinal stromal tumor (ortholog); genetic disease (ortholog); FOUND IN nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624937610,877 - 626,608 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624937609,185 - 626,023 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (ISO)

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Znf496
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624937610,877 - 626,608 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624937609,185 - 626,023 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
ZNF496
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381247,297,415 - 247,331,867 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1247,297,412 - 247,331,867 (-)EnsemblGRCh38hg38GRCh38
GRCh371247,460,717 - 247,495,169 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361245,530,245 - 245,561,668 (-)NCBINCBI36Build 36hg18NCBI36
Build 341243,789,663 - 243,821,086NCBI
Celera1220,759,980 - 220,791,668 (-)NCBICelera
Cytogenetic Map1q44NCBI
HuRef1217,858,464 - 217,889,889 (-)NCBIHuRef
CHM1_11248,735,859 - 248,767,200 (-)NCBICHM1_1
T2T-CHM13v2.01246,730,535 - 246,764,981 (-)NCBIT2T-CHM13v2.0
Zkscan17
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391159,376,346 - 59,397,466 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1159,376,346 - 59,417,577 (-)EnsemblGRCm39 Ensembl
GRCm381159,485,520 - 59,506,640 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1159,485,520 - 59,526,751 (-)EnsemblGRCm38mm10GRCm38
MGSCv371159,299,023 - 59,320,142 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361160,021,662 - 60,042,011 (-)NCBIMGSCv36mm8
MGSCv361159,301,757 - 59,322,106 (-)NCBIMGSCv36mm8
Cytogenetic Map11B1.3NCBI
cM Map1137.72NCBI
Zfp496
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81044,768,463 - 44,787,386 (-)NCBIGRCr8
mRatBN7.21044,268,923 - 44,287,795 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1044,268,928 - 44,287,651 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1048,963,277 - 48,982,032 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01048,453,634 - 48,472,389 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01043,957,247 - 43,976,001 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01045,833,259 - 45,852,130 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1045,833,264 - 45,851,984 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01045,589,179 - 45,608,737 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41045,789,046 - 45,807,920 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11045,804,204 - 45,821,075 (-)NCBI
Celera1043,530,550 - 43,549,391 (-)NCBICelera
Cytogenetic Map10q22NCBI
Znf496
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955581541,088 - 558,907 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955581543,526 - 559,514 (-)NCBIChiLan1.0ChiLan1.0
ZNF496
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v211,728,242 - 1,762,052 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan111,998,013 - 2,035,750 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01222,929,917 - 222,965,629 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11228,384,527 - 228,422,404 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1228,384,527 - 228,422,390 (-)Ensemblpanpan1.1panPan2
ZNF496
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.18169,247 - 196,996 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl8171,476 - 196,647 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha8195,084 - 222,848 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.08217,090 - 244,793 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.18160,025 - 187,713 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.08122,029 - 149,810 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.08254,470 - 282,162 (-)NCBIUU_Cfam_GSD_1.0
Znf496
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721388,198,361 - 88,223,016 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936864539,455 - 564,298 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936864539,638 - 564,292 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZNF496
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl257,053,652 - 57,097,828 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1257,053,417 - 57,097,831 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2257,950,180 - 58,026,138 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ZNF496
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12584,316,335 - 84,346,604 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2584,314,623 - 84,346,550 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605586,659,429 - 86,690,738 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000001466   ⟹   ENSHGLP00000001422
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_004624937610,877 - 626,608 (+)Ensembl
RefSeq Acc Id: XM_021252125   ⟹   XP_021107784
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624937610,865 - 626,023 (+)NCBI
RefSeq Acc Id: XM_021252127   ⟹   XP_021107786
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624937609,185 - 626,023 (+)NCBI
RefSeq Acc Id: XM_021252128   ⟹   XP_021107787
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624937609,185 - 626,023 (+)NCBI
RefSeq Acc Id: XM_021252129   ⟹   XP_021107788
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624937610,865 - 626,023 (+)NCBI
Protein Sequences
Protein RefSeqs XP_021107784 (Get FASTA)   NCBI Sequence Viewer  
  XP_021107786 (Get FASTA)   NCBI Sequence Viewer  
  XP_021107787 (Get FASTA)   NCBI Sequence Viewer  
  XP_021107788 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000001422
Reference Protein Sequences
RefSeq Acc Id: XP_021107786   ⟸   XM_021252127
RefSeq Acc Id: XP_021107787   ⟸   XM_021252128
RefSeq Acc Id: XP_021107784   ⟸   XM_021252125
RefSeq Acc Id: XP_021107788   ⟸   XM_021252129
RefSeq Acc Id: ENSHGLP00000001422   ⟸   ENSHGLT00000001466


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000001102 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000001466 ENTREZGENE
NCBI Gene Znf496 ENTREZGENE