Slc39a2 (solute carrier family 39 member 2) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Slc39a2 (solute carrier family 39 member 2) Heterocephalus glaber
Analyze
Symbol: Slc39a2
Name: solute carrier family 39 member 2
RGD ID: 18933169
Description: ENCODES a protein that exhibits metal ion transmembrane transporter activity (inferred); zinc ion transmembrane transporter activity (inferred); INVOLVED IN cadmium ion transmembrane transport (ortholog); keratinocyte differentiation (ortholog); zinc ion transport (ortholog); ASSOCIATED WITH Brain-Lung-Thyroid Syndrome (ortholog); genetic disease (ortholog); purine nucleoside phosphorylase deficiency (ortholog); FOUND IN cytoplasmic ribonucleoprotein granule (ortholog); cytoplasmic vesicle (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Zinc transporter ZIP2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248256,999,039 - 7,002,141 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248256,996,864 - 7,011,917 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:30032202  


Genomics

Comparative Map Data
Slc39a2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248256,999,039 - 7,002,141 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248256,996,864 - 7,011,917 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
SLC39A2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381420,999,293 - 21,001,871 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1420,999,255 - 21,001,871 (+)EnsemblGRCh38hg38GRCh38
GRCh371421,467,452 - 21,470,030 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361420,537,259 - 20,539,870 (+)NCBINCBI36Build 36hg18NCBI36
Build 341420,537,309 - 20,539,870NCBI
Celera141,328,279 - 1,330,899 (+)NCBICelera
Cytogenetic Map14q11.2NCBI
HuRef141,588,520 - 1,591,140 (+)NCBIHuRef
CHM1_11421,469,515 - 21,472,135 (+)NCBICHM1_1
T2T-CHM13v2.01415,196,693 - 15,199,271 (+)NCBIT2T-CHM13v2.0
Slc39a2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391452,130,539 - 52,134,202 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1452,130,346 - 52,134,202 (+)EnsemblGRCm39 Ensembl
GRCm381451,893,082 - 51,896,745 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1451,892,889 - 51,896,745 (+)EnsemblGRCm38mm10GRCm38
MGSCv371452,513,285 - 52,516,420 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361450,815,559 - 50,818,696 (+)NCBIMGSCv36mm8
Celera1448,878,496 - 48,881,630 (+)NCBICelera
Cytogenetic Map14C2NCBI
cM Map1426.71NCBI
Slc39a2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81527,063,699 - 27,066,349 (+)NCBIGRCr8
mRatBN7.21524,590,738 - 24,592,850 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1524,590,738 - 24,592,850 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1527,361,775 - 27,363,891 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01528,317,522 - 28,319,634 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01526,570,466 - 26,572,578 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01528,295,044 - 28,297,688 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1528,295,368 - 28,297,684 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01532,108,556 - 32,110,668 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41527,328,308 - 27,330,420 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11527,344,131 - 27,345,845 (+)NCBI
Celera1524,896,195 - 24,898,307 (+)NCBICelera
Cytogenetic Map15p14NCBI
Slc39a2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555501,762,907 - 1,765,254 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555501,762,905 - 1,765,254 (+)NCBIChiLan1.0ChiLan1.0
SLC39A2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21522,449,102 - 22,455,203 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11421,667,086 - 21,671,597 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0141,813,992 - 1,818,226 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11419,896,112 - 19,898,728 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1419,896,112 - 19,898,728 (+)Ensemblpanpan1.1panPan2
SLC39A2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11518,099,310 - 18,102,884 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1518,100,785 - 18,102,896 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1518,584,806 - 18,588,423 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01518,360,111 - 18,363,728 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1518,361,630 - 18,363,726 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11518,041,468 - 18,045,085 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01518,097,460 - 18,101,077 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01518,225,334 - 18,228,951 (+)NCBIUU_Cfam_GSD_1.0
Slc39a2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864032,298,786 - 32,302,504 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936880209,738 - 211,531 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936880207,810 - 211,876 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC39A2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl778,129,237 - 78,131,819 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1778,127,628 - 78,132,900 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
SLC39A2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12921,472,627 - 21,475,549 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2921,473,123 - 21,475,252 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605924,960,605 - 24,963,604 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000003453   ⟹   ENSHGLP00000003398
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248256,999,039 - 7,002,141 (+)Ensembl
RefSeq Acc Id: XM_004865027   ⟹   XP_004865084
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248256,996,869 - 7,001,142 (+)NCBI
RefSeq Acc Id: XM_004865028   ⟹   XP_004865085
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248256,996,864 - 7,011,896 (+)NCBI
RefSeq Acc Id: XM_004865029   ⟹   XP_004865086
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248256,996,866 - 7,000,385 (+)NCBI
RefSeq Acc Id: XM_013065714   ⟹   XP_012921168
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248256,996,864 - 7,011,917 (+)NCBI
RefSeq Acc Id: XR_002389396
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248256,996,866 - 7,000,261 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004865084 (Get FASTA)   NCBI Sequence Viewer  
  XP_004865085 (Get FASTA)   NCBI Sequence Viewer  
  XP_004865086 (Get FASTA)   NCBI Sequence Viewer  
  XP_012921168 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB08176 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000003398
  ENSHGLP00100000511
GenBank Protein JAN99866 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_012921168   ⟸   XM_013065714
- Peptide Label: isoform X2
RefSeq Acc Id: XP_004865085   ⟸   XM_004865028
- Peptide Label: isoform X3
RefSeq Acc Id: XP_004865086   ⟸   XM_004865029
- Peptide Label: isoform X3
RefSeq Acc Id: XP_004865084   ⟸   XM_004865027
- Peptide Label: isoform X1
- UniProtKB: G5BFW5 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000003398   ⟸   ENSHGLT00000003453


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000002511 Ensembl, ENTREZGENE
  ENSHGLG00100000429 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000003453 ENTREZGENE
  ENSHGLT00100000542 UniProtKB/TrEMBL
InterPro ZIP UniProtKB/TrEMBL
KEGG Report hgl:101722290 UniProtKB/TrEMBL
NCBI Gene Slc39a2 ENTREZGENE
PANTHER ZINC TRANSPORTER ZIP2 UniProtKB/TrEMBL
  ZINC/IRON TRANSPORTER UniProtKB/TrEMBL
Pfam Zip UniProtKB/TrEMBL
UniProt G5BFW5 ENTREZGENE, UniProtKB/TrEMBL