Khdrbs1 (KH RNA binding domain containing, signal transduction associated 1) - Rat Genome Database

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Gene: Khdrbs1 (KH RNA binding domain containing, signal transduction associated 1) Heterocephalus glaber
Analyze
Symbol: Khdrbs1
Name: KH RNA binding domain containing, signal transduction associated 1
RGD ID: 18932989
Description: ENCODES a protein that exhibits protein-containing complex binding (ortholog); SH3 domain binding (ortholog); INVOLVED IN negative regulation of transcription by RNA polymerase II (ortholog); regulation of protein stability (ortholog); regulation of RNA export from nucleus (ortholog); ASSOCIATED WITH atherosclerosis (ortholog); genetic disease (ortholog); primary ovarian insufficiency (ortholog); FOUND IN Grb2-Sos complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: KH domain-containing, RNA-binding, signal transduction-associated protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476415,244,390 - 15,275,379 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476415,244,521 - 15,292,901 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Khdrbs1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476415,244,390 - 15,275,379 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476415,244,521 - 15,292,901 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
KHDRBS1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38132,013,868 - 32,060,850 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl132,013,868 - 32,060,850 (+)EnsemblGRCh38hg38GRCh38
GRCh37132,479,469 - 32,526,451 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36132,252,078 - 32,282,059 (+)NCBINCBI36Build 36hg18NCBI36
Build 34132,148,583 - 32,178,565NCBI
Celera130,749,379 - 30,779,362 (+)NCBICelera
Cytogenetic Map1p35.2NCBI
HuRef130,595,973 - 30,643,133 (+)NCBIHuRef
CHM1_1132,594,894 - 32,642,040 (+)NCBICHM1_1
T2T-CHM13v2.0131,871,794 - 31,918,779 (+)NCBIT2T-CHM13v2.0
Khdrbs1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394129,596,143 - 129,637,402 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4129,596,957 - 129,636,096 (-)EnsemblGRCm39 Ensembl
GRCm384129,702,380 - 129,743,878 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4129,703,164 - 129,742,303 (-)EnsemblGRCm38mm10GRCm38
MGSCv374129,392,103 - 129,419,526 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364129,218,078 - 129,244,570 (-)NCBIMGSCv36mm8
Celera4128,049,339 - 128,077,091 (-)NCBICelera
Cytogenetic Map4D2.2NCBI
cM Map463.34NCBI
Khdrbs1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85147,337,048 - 147,374,604 (-)NCBIGRCr8
mRatBN7.25142,051,844 - 142,089,175 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5142,063,570 - 142,089,180 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5144,764,372 - 144,790,877 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05146,534,194 - 146,560,697 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05146,530,842 - 146,557,424 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05147,927,145 - 147,953,093 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5147,927,152 - 147,953,093 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05151,655,530 - 151,680,547 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45148,801,685 - 148,802,351 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15148,882,113 - 148,909,264 (-)NCBI
Celera5140,536,987 - 140,562,345 (-)NCBICelera
Cytogenetic Map5q36NCBI
Khdrbs1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545210,413,883 - 10,440,678 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545210,413,883 - 10,458,518 (+)NCBIChiLan1.0ChiLan1.0
KHDRBS1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21194,768,104 - 194,817,464 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11193,889,907 - 193,939,241 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0131,297,843 - 31,345,148 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1132,312,598 - 32,342,587 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl132,312,598 - 32,342,582 (+)Ensemblpanpan1.1panPan2
KHDRBS1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1269,108,822 - 69,148,067 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl269,123,663 - 69,148,073 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha265,689,332 - 65,728,750 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0269,675,445 - 69,714,910 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl269,689,360 - 69,714,870 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1266,511,546 - 66,550,990 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0267,507,703 - 67,547,145 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0268,506,957 - 68,546,417 (-)NCBIUU_Cfam_GSD_1.0
Khdrbs1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505849,264,153 - 49,292,459 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647415,088,816 - 15,118,310 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647415,088,815 - 15,131,048 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KHDRBS1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl688,530,385 - 88,572,463 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1688,530,364 - 88,572,467 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2682,393,560 - 82,435,657 (+)NCBISscrofa10.2Sscrofa10.2susScr3
KHDRBS1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120100,831,307 - 100,859,609 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl20100,832,461 - 100,859,630 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603315,832,445 - 15,860,835 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000016848   ⟹   ENSHGLP00000016677
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462476415,244,390 - 15,275,379 (+)Ensembl
RefSeq Acc Id: XM_004850831   ⟹   XP_004850888
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476415,244,521 - 15,276,373 (+)NCBI
RefSeq Acc Id: XR_001183867
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476415,244,521 - 15,292,901 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004850888 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000016677
  ENSHGLP00100012031
GenBank Protein JAO02156 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_004850888   ⟸   XM_004850831
- UniProtKB: A0A0P6JCN4 (UniProtKB/TrEMBL),   G5BU98 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000016677   ⟸   ENSHGLT00000016848


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000011935 Ensembl, ENTREZGENE
  ENSHGLG00100008915 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000016848 ENTREZGENE
  ENSHGLT00100012172 UniProtKB/TrEMBL
Gene3D-CATH 3.30.1370.10 UniProtKB/TrEMBL
InterPro BBP-like UniProtKB/TrEMBL
  KH_dom UniProtKB/TrEMBL
  KH_dom_type_1 UniProtKB/TrEMBL
  KH_dom_type_1_sf UniProtKB/TrEMBL
  Qua1_dom UniProtKB/TrEMBL
  Sam68-YY UniProtKB/TrEMBL
KEGG Report hgl:101708086 UniProtKB/TrEMBL
NCBI Gene Khdrbs1 ENTREZGENE
PANTHER KH DOMAIN-CONTAINING, RNA-BINDING, SIGNAL TRANSDUCTION-ASSOCIATED PROTEIN 1 UniProtKB/TrEMBL
  PTHR11208 UniProtKB/TrEMBL
Pfam KH_1 UniProtKB/TrEMBL
  Qua1 UniProtKB/TrEMBL
  Sam68-YY UniProtKB/TrEMBL
PROSITE KH_TYPE_1 UniProtKB/TrEMBL
SMART SM00322 UniProtKB/TrEMBL
Superfamily-SCOP SSF54791 UniProtKB/TrEMBL
UniProt A0A0P6JCN4 ENTREZGENE, UniProtKB/TrEMBL
  G5BU98 ENTREZGENE, UniProtKB/TrEMBL