Zbtb11 (zinc finger and BTB domain containing 11) - Rat Genome Database

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Gene: Zbtb11 (zinc finger and BTB domain containing 11) Heterocephalus glaber
Analyze
Symbol: Zbtb11
Name: zinc finger and BTB domain containing 11
RGD ID: 18932953
Description: ENCODES a protein that exhibits DNA-binding transcription factor activity, RNA polymerase II-specific (inferred); INVOLVED IN regulation of transcription by RNA polymerase II (inferred); ASSOCIATED WITH autosomal recessive intellectual developmental disorder 69 (ortholog); gastrointestinal stromal tumor (ortholog); genetic disease (ortholog); FOUND IN nucleoplasm (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: zinc finger and BTB domain-containing protein 11
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478915,456,346 - 15,486,320 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478915,456,868 - 15,483,379 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleoplasm  (IEA)
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Zbtb11
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478915,456,346 - 15,486,320 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478915,456,868 - 15,483,379 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
ZBTB11
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383101,648,889 - 101,677,132 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3101,648,889 - 101,677,135 (-)EnsemblGRCh38hg38GRCh38
GRCh373101,367,733 - 101,395,976 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363102,850,978 - 102,878,607 (-)NCBINCBI36Build 36hg18NCBI36
Build 343102,850,980 - 102,878,607NCBI
Celera399,761,387 - 99,789,095 (-)NCBICelera
Cytogenetic Map3q12.3NCBI
HuRef398,737,439 - 98,765,148 (-)NCBIHuRef
CHM1_13101,331,586 - 101,359,291 (-)NCBICHM1_1
T2T-CHM13v2.03104,361,496 - 104,389,742 (-)NCBIT2T-CHM13v2.0
Zbtb11
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391655,791,820 - 55,829,276 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1655,794,246 - 55,829,276 (+)EnsemblGRCm39 Ensembl
GRCm381655,971,437 - 56,008,913 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1655,973,883 - 56,008,913 (+)EnsemblGRCm38mm10GRCm38
MGSCv371655,973,917 - 56,009,026 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361655,973,929 - 56,009,026 (+)NCBIMGSCv36mm8
Celera1656,288,877 - 56,323,900 (+)NCBICelera
Cytogenetic Map16C1.1NCBI
cM Map1633.74NCBI
Zbtb11
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81158,061,355 - 58,121,768 (-)NCBIGRCr8
mRatBN7.21144,598,694 - 44,652,559 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1144,616,289 - 44,651,050 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1153,392,673 - 53,427,452 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01146,054,291 - 46,089,070 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01145,178,460 - 45,213,241 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01147,079,201 - 47,113,993 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1147,079,234 - 47,113,993 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01150,261,091 - 50,295,883 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41145,591,191 - 45,625,950 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11145,650,340 - 45,683,540 (-)NCBI
Celera1144,366,794 - 44,401,849 (-)NCBICelera
Cytogenetic Map11q12NCBI
Zbtb11
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554273,173,109 - 3,198,437 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554273,173,109 - 3,198,437 (-)NCBIChiLan1.0ChiLan1.0
ZBTB11
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2299,586,155 - 99,617,632 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1399,590,937 - 99,622,410 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0398,738,205 - 98,765,901 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13105,417,699 - 105,447,727 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3105,417,699 - 105,446,959 (-)Ensemblpanpan1.1panPan2
ZBTB11
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1337,983,192 - 8,015,590 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl337,984,851 - 8,015,391 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha338,137,596 - 8,170,017 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0338,122,276 - 8,154,715 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl338,122,282 - 8,154,475 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1338,009,888 - 8,042,271 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0338,056,457 - 8,088,671 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0338,396,585 - 8,429,023 (-)NCBIUU_Cfam_GSD_1.0
Zbtb11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602148,862,980 - 148,890,732 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366301,759,902 - 1,788,765 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366301,760,015 - 1,788,629 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZBTB11
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13157,422,007 - 157,460,212 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113157,422,024 - 157,460,216 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213166,902,762 - 166,940,729 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ZBTB11
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12279,212,022 - 79,242,131 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2279,212,476 - 79,242,476 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604187,314,931 - 87,346,295 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000002271   ⟹   ENSHGLP00000002222
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462478915,456,346 - 15,486,320 (-)Ensembl
RefSeq Acc Id: XM_004857992   ⟹   XP_004858049
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462478915,456,868 - 15,483,379 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004858049 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000002222
GenBank Protein JAN97140 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_004858049   ⟸   XM_004857992
- UniProtKB: A0A0P6J1P7 (UniProtKB/TrEMBL),   G5C019 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000002222   ⟸   ENSHGLT00000002271


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000001683 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000002271 ENTREZGENE
Gene3D-CATH 1.10.340.70 UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
InterPro BTB/POZ_dom UniProtKB/TrEMBL
  Integrase_H2C2 UniProtKB/TrEMBL
  SKP1/BTB/POZ_sf UniProtKB/TrEMBL
  ZBTB11_BTB_POZ UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
NCBI Gene Zbtb11 ENTREZGENE
PANTHER GM08392P UniProtKB/TrEMBL
  ZINC FINGER PROTEIN UniProtKB/TrEMBL
Pfam BTB UniProtKB/TrEMBL
  Integrase_H2C2 UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/TrEMBL
  zf-C2H2_6 UniProtKB/TrEMBL
PROSITE BTB UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART BTB UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF54695 UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt A0A0P6J1P7 ENTREZGENE, UniProtKB/TrEMBL
  G5C019 ENTREZGENE, UniProtKB/TrEMBL