Rae1 (ribonucleic acid export 1) - Rat Genome Database

Name: Rae1
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Rae1 (ribonucleic acid export 1) Heterocephalus glaber

Analyze

Symbol:

Rae1

Name:

ribonucleic acid export 1

RGD ID:

18932588

Description:

ENCODES a protein that exhibits RNA binding (inferred); ubiquitin binding (inferred); INVOLVED IN cellular response to organic cyclic compound (ortholog); regulation of mitotic spindle organization (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN fibrillar center (ortholog); mitotic spindle pole (ortholog); nuclear envelope (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

mRNA export factor; RAE1 RNA export 1 homolog

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly

Position:

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624741	23,803,292 - 23,825,834 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624741	23,803,325 - 23,825,718 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cellular response to organic cyclic compound (ISO)

regulation of mitotic spindle organization (ISO)

RNA export from nucleus (IEA)

transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery (IEA)

Cellular Component

fibrillar center (ISO)

mitotic spindle pole (ISO)

nuclear envelope (ISO)

nuclear pore (IEA)

nucleoplasm (ISO)

spindle pole (IEA)

Molecular Function

protein binding (ISO)

RNA binding (IEA)

ubiquitin binding (IEA)

References

Additional References at PubMed

PMID:21993625	PMID:30032202

Genomics

Comparative Map Data

Rae1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624741	23,803,292 - 23,825,834 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624741	23,803,325 - 23,825,718 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

RAE1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	20	57,351,255 - 57,379,202 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	20	57,351,223 - 57,379,211 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	20	55,926,311 - 55,954,258 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	20	55,359,552 - 55,386,926 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	20	55,359,723 - 55,386,918	NCBI
Celera	20	52,666,382 - 52,693,760 (+)	NCBI		Celera
Cytogenetic Map	20	q13.31	NCBI
HuRef	20	52,708,342 - 52,735,720 (+)	NCBI		HuRef
CHM1_1	20	55,827,102 - 55,854,476 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	20	59,128,709 - 59,156,957 (+)	NCBI		T2T-CHM13v2.0

Rae1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	172,841,909 - 172,857,532 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	172,841,910 - 172,857,532 (+)	Ensembl		GRCm39 Ensembl
GRCm38	2	173,000,116 - 173,015,739 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	173,000,117 - 173,015,739 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	172,825,638 - 172,841,233 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	172,643,076 - 172,658,671 (+)	NCBI		MGSCv36	mm8
Celera	2	178,965,522 - 178,981,108 (+)	NCBI		Celera
Cytogenetic Map	2	H3	NCBI
cM Map	2	95.66	NCBI

Rae1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	182,197,432 - 182,212,381 (+)	NCBI		GRCr8
mRatBN7.2	3	161,779,096 - 161,794,048 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	161,779,088 - 161,794,038 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	165,591,130 - 165,605,882 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	174,090,072 - 174,104,824 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	171,831,889 - 171,846,641 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	171,012,984 - 171,030,392 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	171,015,617 - 171,030,384 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	177,081,924 - 177,096,857 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	163,863,196 - 163,877,975 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	3	163,769,222 - 163,784,038 (+)	NCBI
Celera	3	160,972,801 - 160,987,580 (+)	NCBI		Celera
Cytogenetic Map	3	q42	NCBI

Rae1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955445	2,068,431 - 2,084,734 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955445	2,069,791 - 2,084,210 (-)	NCBI	ChiLan1.0	ChiLan1.0

RAE1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	21	63,102,341 - 63,129,559 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	20	63,095,469 - 63,122,678 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	20	53,691,491 - 53,719,456 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	20	54,970,065 - 54,997,278 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	20	54,972,913 - 54,997,273 (+)	Ensembl	panpan1.1		panPan2

RAE1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	24	42,364,559 - 42,385,209 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	24	42,345,547 - 42,384,481 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	24	41,612,165 - 41,632,772 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	24	43,230,084 - 43,250,699 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	24	43,211,048 - 43,250,014 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	24	42,315,596 - 42,335,573 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	24	42,454,744 - 42,475,358 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	24	43,112,941 - 43,133,549 (+)	NCBI		UU_Cfam_GSD_1.0

Rae1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	183,085,769 - 183,105,515 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936530	200,584 - 220,520 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936530	200,369 - 219,807 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RAE1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	17	57,751,852 - 57,768,591 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	17	57,751,858 - 57,768,594 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	17	64,916,069 - 64,932,171 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RAE1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	2	6,744,984 - 6,772,870 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	2	6,744,982 - 6,772,736 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666050	54,807,840 - 54,835,141 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_004840926	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_004840927	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013070762	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AHKG01019624	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AHKG01019625	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GEBF01002707	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JH167037	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSHGLT00000013397 ⟹ ENSHGLP00000013258

Type:

CODING

Position:

Naked Mole-Rat Assembly	Chr	Position (strand)	Source
HetGla_female_1.0 Ensembl	NW_004624741	23,803,292 - 23,825,834 (+)	Ensembl

RefSeq Acc Id:

XM_004840926 ⟹ XP_004840983

Type:

CODING

Position:

Naked Mole-Rat Assembly	Chr	Position (strand)	Source
HetGla 1.0	NW_004624741	23,803,343 - 23,825,718 (+)	NCBI

RefSeq Acc Id:

XM_004840927 ⟹ XP_004840984

Type:

CODING

Position:

Naked Mole-Rat Assembly	Chr	Position (strand)	Source
HetGla 1.0	NW_004624741	23,803,589 - 23,825,718 (+)	NCBI

RefSeq Acc Id:

XM_013070762 ⟹ XP_012926216

Type:

CODING

Position:

Naked Mole-Rat Assembly	Chr	Position (strand)	Source
HetGla 1.0	NW_004624741	23,803,325 - 23,825,718 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_004840983	(Get FASTA)	NCBI Sequence Viewer
	XP_004840984	(Get FASTA)	NCBI Sequence Viewer
	XP_012926216	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EHB00741	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSHGLP00000013258
GenBank Protein	JAO00926	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_012926216 ⟸ XM_013070762
- UniProtKB:	G5AUN0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_004840983 ⟸ XM_004840926
- UniProtKB:	G5AUN0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_004840984 ⟸ XM_004840927
- UniProtKB:	G5AUN0 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSHGLP00000013258 ⟸ ENSHGLT00000013397

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSHGLG00000009471	Ensembl, ENTREZGENE
Ensembl Transcript	ENSHGLT00000013397	ENTREZGENE
Gene3D-CATH	2.130.10.10	UniProtKB/TrEMBL
InterPro	G-protein_beta_WD-40_rep	UniProtKB/TrEMBL
	WD40/YVTN_repeat-like_dom_sf	UniProtKB/TrEMBL
	WD40_repeat	UniProtKB/TrEMBL
	WD40_repeat_CS	UniProtKB/TrEMBL
	WD40_repeat_dom_sf	UniProtKB/TrEMBL
KEGG Report	hgl:101707168	UniProtKB/TrEMBL
NCBI Gene	Rae1	ENTREZGENE
PANTHER	MRNA EXPORT FACTOR AND BUB3	UniProtKB/TrEMBL
	PTHR10971:SF11	UniProtKB/TrEMBL
Pfam	WD40	UniProtKB/TrEMBL
PRINTS	GPROTEINBRPT	UniProtKB/TrEMBL
PROSITE	WD_REPEATS_1	UniProtKB/TrEMBL
	WD_REPEATS_2	UniProtKB/TrEMBL
	WD_REPEATS_REGION	UniProtKB/TrEMBL
SMART	WD40	UniProtKB/TrEMBL
Superfamily-SCOP	SSF50978	UniProtKB/TrEMBL
UniProt	G5AUN0	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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