Tulp1 (TUB like protein 1) - Rat Genome Database

Name: Tulp1
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Tulp1 (TUB like protein 1) Heterocephalus glaber

Analyze

Symbol:

Tulp1

Name:

TUB like protein 1

RGD ID:

18932480

Description:

ENCODES a protein that exhibits actin filament binding (ortholog); phosphatidylinositol-4,5-bisphosphate binding (ortholog); INVOLVED IN dendrite development (ortholog); detection of light stimulus involved in visual perception (ortholog); eye photoreceptor cell development (ortholog); PARTICIPATES IN retinitis pigmentosa pathway; ASSOCIATED WITH brachydactyly (ortholog); Eye Abnormalities (ortholog); fundus dystrophy (ortholog); FOUND IN axon terminus (ortholog); cell projection (ortholog); cytosol (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

tubby like protein 1; tubby-related protein 1

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	TULP1 (TUB like protein 1)	NCBI	Ortholog
Mus musculus (house mouse):	Tulp1 (TUB like protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Tulp1 (TUB like protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Tulp1 (TUB like protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	TULP1 (TUB like protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	TULP1 (TUB like protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Tulp1 (TUB like protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	TULP1 (TUB like protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	TULP1 (TUB like protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly

Position:

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624754	21,961,513 - 21,971,362 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

brachydactyly (ISO)

Eye Abnormalities (ISO)

fundus dystrophy (ISO)

genetic disease (ISO)

Leber congenital amaurosis (ISO)

Leber congenital amaurosis 1 (ISO)

Leber congenital amaurosis 15 (ISO)

proteasome-associated autoinflammatory syndrome 1 (ISO)

retinitis pigmentosa (ISO)

retinitis pigmentosa 14 (ISO)

Stargardt disease (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

dendrite development (ISO)

detection of light stimulus involved in visual perception (ISO)

eye photoreceptor cell development (ISO)

phagocytosis, recognition (ISO)

photoreceptor cell maintenance (ISO)

positive regulation of phagocytosis (ISO)

protein localization to photoreceptor outer segment (ISO)

retina development in camera-type eye (ISO)

retina homeostasis (ISO)

vesicle-mediated transport (ISO)

Cellular Component

axon terminus (ISO)

cell projection (ISO)

cytosol (ISO)

extracellular region (ISO)

photoreceptor inner segment (ISO)

photoreceptor outer segment (ISO)

plasma membrane (ISO)

synapse (ISO)

Molecular Function

actin filament binding (ISO)

phosphatidylinositol-4,5-bisphosphate binding (ISO)

protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

retinitis pigmentosa pathway (ISO)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

Tulp1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624754	21,961,513 - 21,971,362 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

TULP1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	35,497,874 - 35,512,896 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	6	35,497,874 - 35,512,896 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	6	35,465,651 - 35,480,673 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	35,573,629 - 35,588,625 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	6	35,573,631 - 35,588,623	NCBI
Celera	6	37,019,631 - 37,034,629 (-)	NCBI		Celera
Cytogenetic Map	6	p21.31	NCBI
HuRef	6	35,186,429 - 35,201,277 (-)	NCBI		HuRef
CHM1_1	6	35,467,671 - 35,482,667 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	6	35,320,953 - 35,335,977 (-)	NCBI		T2T-CHM13v2.0

Tulp1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	17	28,570,489 - 28,584,190 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	17	28,570,489 - 28,584,196 (-)	Ensembl		GRCm39 Ensembl
GRCm38	17	28,351,515 - 28,365,216 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	17	28,351,515 - 28,365,222 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	17	28,488,464 - 28,502,088 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	17	28,079,108 - 28,092,732 (-)	NCBI		MGSCv36	mm8
Celera	17	28,905,341 - 28,919,055 (-)	NCBI		Celera
Cytogenetic Map	17	A3.3	NCBI
cM Map	17	14.66	NCBI

Tulp1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	20	6,413,901 - 6,425,833 (-)	NCBI		GRCr8
mRatBN7.2	20	6,412,170 - 6,424,103 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	20	6,412,171 - 6,424,073 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	20	7,124,802 - 7,136,686 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	20	6,486,630 - 6,498,515 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	20	6,966,085 - 6,977,988 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	20	7,931,673 - 7,943,601 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	20	7,931,674 - 7,943,575 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	20	10,132,030 - 10,143,968 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	20	6,592,448 - 6,604,349 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	20	6,593,007 - 6,635,715 (-)	NCBI
Celera	20	7,968,551 - 7,980,452 (-)	NCBI		Celera
Cytogenetic Map	20	p12	NCBI

Tulp1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955437	3,405,218 - 3,417,079 (-)	NCBI	ChiLan1.0	ChiLan1.0

TULP1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	49,964,664 - 49,979,348 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	45,832,623 - 45,847,316 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	35,058,422 - 35,073,472 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	36,151,294 - 36,166,210 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	36,151,747 - 36,166,160 (-)	Ensembl	panpan1.1		panPan2

TULP1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	12	4,632,580 - 4,644,313 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	12	4,633,098 - 4,645,994 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	12	4,648,007 - 4,661,356 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	12	4,971,110 - 4,984,030 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	12	4,971,137 - 4,984,030 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	12	4,631,362 - 4,644,397 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	12	4,710,151 - 4,723,196 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	12	4,810,347 - 4,823,401 (-)	NCBI		UU_Cfam_GSD_1.0

Tulp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	40,203,228 - 40,215,516 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936476	23,744,757 - 23,756,565 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936476	23,744,707 - 23,757,002 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TULP1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	31,361,873 - 31,379,204 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	7	31,362,670 - 31,379,948 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	36,308,210 - 36,315,788 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TULP1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	17	36,610,749 - 36,625,590 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	17	36,611,171 - 36,625,279 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666044	35,411,198 - 35,425,917 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_021259950	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021259951	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AHKG01035138	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_021259950 ⟹ XP_021115609

Type:

CODING

Position:

Naked Mole-Rat Assembly	Chr	Position (strand)	Source
HetGla 1.0	NW_004624754	21,961,513 - 21,971,362 (+)	NCBI

RefSeq Acc Id:

XM_021259951 ⟹ XP_021115610

Type:

CODING

Position:

Naked Mole-Rat Assembly	Chr	Position (strand)	Source
HetGla 1.0	NW_004624754	21,961,513 - 21,971,362 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_021115609	(Get FASTA)	NCBI Sequence Viewer
	XP_021115610	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_021115609 ⟸ XM_021259950
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_021115610 ⟸ XM_021259951
- Peptide Label:	isoform X2

Additional Information

External Database Links

Database	Acc Id	Source(s)
NCBI Gene	Tulp1	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM

RGD Manual Annotations

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM

RGD Manual Annotations