Znf653 (zinc finger protein 653) - Rat Genome Database

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Gene: Znf653 (zinc finger protein 653) Heterocephalus glaber
Analyze
Symbol: Znf653
Name: zinc finger protein 653
RGD ID: 18932038
Description: ENCODES a protein that exhibits AF-2 domain binding (ortholog); DNA-binding transcription factor binding (ortholog); transcription corepressor activity (ortholog); INVOLVED IN extracellular negative regulation of signal transduction (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH alpha-mannosidosis (ortholog); Charcot-Marie-Tooth disease dominant intermediate B (ortholog); episodic ataxia type 2 (ortholog); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248283,250,919 - 3,263,712 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248283,250,683 - 3,263,915 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Znf653
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248283,250,919 - 3,263,712 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248283,250,683 - 3,263,915 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
ZNF653
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381911,483,429 - 11,505,839 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1911,483,427 - 11,505,839 (-)EnsemblGRCh38hg38GRCh38
GRCh371911,594,244 - 11,616,654 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361911,455,246 - 11,477,654 (-)NCBINCBI36Build 36hg18NCBI36
Build 341911,455,245 - 11,477,654NCBI
Celera1911,488,980 - 11,511,481 (-)NCBICelera
Cytogenetic Map19p13.2NCBI
HuRef1911,168,853 - 11,191,511 (-)NCBIHuRef
CHM1_11911,594,307 - 11,616,803 (-)NCBICHM1_1
T2T-CHM13v2.01911,610,937 - 11,633,342 (-)NCBIT2T-CHM13v2.0
Zfp653
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39921,966,705 - 21,982,707 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl921,966,707 - 21,982,672 (-)EnsemblGRCm39 Ensembl
GRCm38922,055,411 - 22,071,395 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl922,055,411 - 22,071,376 (-)EnsemblGRCm38mm10GRCm38
MGSCv37921,859,904 - 21,875,789 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36921,805,862 - 21,821,747 (-)NCBIMGSCv36mm8
Celera919,324,393 - 19,340,278 (-)NCBICelera
Cytogenetic Map9A3NCBI
cM Map98.18NCBI
Zfp653
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8828,862,618 - 28,881,439 (-)NCBIGRCr8
mRatBN7.2820,586,607 - 20,605,439 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl820,586,563 - 20,604,864 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx824,615,485 - 24,633,773 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0822,912,623 - 22,930,911 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0820,816,108 - 20,834,408 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0823,066,576 - 23,085,502 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl823,066,576 - 23,084,879 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0823,121,360 - 23,139,963 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4821,161,793 - 21,180,092 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1821,162,095 - 21,180,009 (-)NCBI
Celera821,977,392 - 21,995,212 (-)NCBICelera
Cytogenetic Map8q13NCBI
Znf653
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554952,363,334 - 2,375,654 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554952,363,123 - 2,375,895 (-)NCBIChiLan1.0ChiLan1.0
ZNF653
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22016,396,093 - 16,418,500 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11915,395,112 - 15,417,532 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01911,029,561 - 11,051,967 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11911,740,315 - 11,763,707 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1911,740,585 - 11,763,707 (-)Ensemblpanpan1.1panPan2
ZNF653
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12049,867,522 - 49,883,889 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2049,866,056 - 49,883,847 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2049,738,661 - 49,755,033 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02050,385,820 - 50,402,174 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2050,384,340 - 50,402,132 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12049,596,144 - 49,612,496 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02050,022,286 - 50,038,639 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02050,265,471 - 50,281,817 (+)NCBIUU_Cfam_GSD_1.0
Znf653
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118208,804,773 - 208,821,172 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366591,533,479 - 1,551,454 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366591,533,564 - 1,550,106 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZNF653
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl270,136,443 - 70,154,458 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1270,136,777 - 70,154,458 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2270,489,371 - 70,507,715 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ZNF653
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1610,407,624 - 10,430,246 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl610,406,808 - 10,430,029 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660749,456,192 - 9,479,175 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000021475   ⟹   ENSHGLP00000021269
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248283,250,919 - 3,263,712 (-)Ensembl
RefSeq Acc Id: XM_004865600   ⟹   XP_004865657
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248283,250,683 - 3,263,915 (-)NCBI
RefSeq Acc Id: XM_013066009   ⟹   XP_012921463
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248283,250,683 - 3,263,915 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004865657 (Get FASTA)   NCBI Sequence Viewer  
  XP_012921463 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000021269
Reference Protein Sequences
RefSeq Acc Id: XP_012921463   ⟸   XM_013066009
- Peptide Label: isoform X2
RefSeq Acc Id: XP_004865657   ⟸   XM_004865600
- Peptide Label: isoform X1
- UniProtKB: G5AJT9 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000021269   ⟸   ENSHGLT00000021475


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000015197 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000021475 ENTREZGENE
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
InterPro Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
NCBI Gene Znf653 ENTREZGENE
PANTHER KRUEPPEL-LIKE FACTOR 15 UniProtKB/TrEMBL
  KRUEPPEL-LIKE TRANSCRIPTION FACTOR UniProtKB/TrEMBL
Pfam zf-C2H2 UniProtKB/TrEMBL
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP beta-beta-alpha zinc fingers UniProtKB/TrEMBL
UniProt G5AJT9 ENTREZGENE, UniProtKB/TrEMBL