N4bp2l2 (NEDD4 binding protein 2 like 2) - Rat Genome Database

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Gene: N4bp2l2 (NEDD4 binding protein 2 like 2) Heterocephalus glaber
Analyze
Symbol: N4bp2l2
Name: NEDD4 binding protein 2 like 2
RGD ID: 18931808
Description: ENCODES a protein that exhibits enzyme binding (ortholog); transcription corepressor activity (ortholog); INVOLVED IN blastocyst development (ortholog); in utero embryonic development (ortholog); negative regulation of hematopoietic stem cell differentiation (ortholog); ASSOCIATED WITH Arsenic Poisoning (ortholog); Dwarfism (ortholog); genetic disease (ortholog); FOUND IN nucleus (ortholog); transcription repressor complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: NEDD4-binding protein 2-like 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247765,295,054 - 5,467,454 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
N4bp2l2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247765,295,054 - 5,467,454 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
N4BP2L2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381332,432,485 - 32,538,868 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1332,432,417 - 32,538,885 (-)EnsemblGRCh38hg38GRCh38
GRCh371333,006,622 - 33,113,005 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361331,904,930 - 32,010,936 (-)NCBINCBI36Build 36hg18NCBI36
Celera1314,073,721 - 14,179,731 (-)NCBICelera
Cytogenetic Map13q13.1NCBI
HuRef1313,818,368 - 13,923,753 (-)NCBIHuRef
CHM1_11332,974,162 - 33,080,564 (-)NCBICHM1_1
T2T-CHM13v2.01331,649,729 - 31,756,133 (-)NCBIT2T-CHM13v2.0
N4bp2l2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395150,515,310 - 150,589,213 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5150,531,472 - 150,589,648 (-)EnsemblGRCm39 Ensembl
GRCm385150,599,931 - 150,665,748 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5150,608,007 - 150,666,183 (-)EnsemblGRCm38mm10GRCm38
MGSCv375151,438,548 - 151,468,187 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365150,916,589 - 150,933,956 (-)NCBIMGSCv36mm8
Celera5148,640,440 - 148,670,079 (-)NCBICelera
Cytogenetic Map5G3NCBI
N4bp2l2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8124,972,967 - 5,038,027 (-)NCBIGRCr8
mRatBN7.212137,342 - 200,292 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl12103,590 - 197,784 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx12706,021 - 768,933 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0121,228,260 - 1,291,179 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.012127,903 - 190,623 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.012627,128 - 650,604 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl12628,488 - 650,376 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.012611,943 - 635,074 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4124,184,417 - 4,205,550 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1124,184,416 - 4,205,549 (+)NCBI
Celera121,887,059 - 1,908,425 (-)NCBICelera
Cytogenetic Map12p12NCBI
N4bp2l2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495543113,314,075 - 13,418,090 (+)NCBIChiLan1.0ChiLan1.0
N4BP2L2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21431,998,173 - 32,106,760 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11323,105,030 - 23,213,013 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01313,691,326 - 13,803,162 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11332,133,618 - 32,231,146 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1332,133,603 - 32,231,003 (-)Ensemblpanpan1.1panPan2
N4BP2L2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1257,622,032 - 7,694,396 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl257,623,670 - 7,694,398 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha257,651,935 - 7,724,601 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0257,718,162 - 7,791,082 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl257,718,103 - 7,790,814 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1257,618,218 - 7,691,056 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0257,616,390 - 7,689,291 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0257,673,686 - 7,746,570 (+)NCBIUU_Cfam_GSD_1.0
N4bp2l2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945168,816,704 - 168,905,434 (+)NCBIHiC_Itri_2
SpeTri2.0NW_00493647227,045,052 - 27,134,170 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
N4BP2L2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1118,891,053 - 8,997,810 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2118,713,909 - 8,737,772 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103214263
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1311,191,215 - 11,287,434 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl311,197,302 - 11,285,607 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605733,065,334 - 33,161,891 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_004854762   ⟹   XP_004854819
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247765,295,054 - 5,458,941 (+)NCBI
RefSeq Acc Id: XM_013075843   ⟹   XP_012931297
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247765,295,054 - 5,467,454 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004854819 (Get FASTA)   NCBI Sequence Viewer  
  XP_012931297 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_012931297   ⟸   XM_013075843
- Peptide Label: isoform X1
RefSeq Acc Id: XP_004854819   ⟸   XM_004854762
- Peptide Label: isoform X2


Additional Information

Database Acc Id Source(s)
NCBI Gene N4bp2l2 ENTREZGENE