Arfip1 (ADP ribosylation factor interacting protein 1) - Rat Genome Database

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Gene: Arfip1 (ADP ribosylation factor interacting protein 1) Heterocephalus glaber
Analyze
Symbol: Arfip1
Name: ADP ribosylation factor interacting protein 1
RGD ID: 18931548
Description: ENCODES a protein that exhibits phosphatidylinositol-4-phosphate binding (ortholog); INVOLVED IN intracellular protein transport (ortholog); negative regulation of retrograde transport, endosome to Golgi (ortholog); regulation of protein secretion (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN cytosol (ortholog); Golgi membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Arfaptin-1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248584,193,357 - 4,299,652 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248584,193,418 - 4,299,445 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Arfip1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248584,193,357 - 4,299,652 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248584,193,418 - 4,299,445 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
ARFIP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384152,779,954 - 152,912,357 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4152,779,937 - 152,918,463 (+)EnsemblGRCh38hg38GRCh38
GRCh374153,701,106 - 153,833,509 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 364153,920,562 - 154,052,514 (+)NCBINCBI36Build 36hg18NCBI36
Build 344154,058,727 - 154,189,053NCBI
Celera4151,025,104 - 151,157,752 (+)NCBICelera
Cytogenetic Map4q31.3NCBI
HuRef4149,427,137 - 149,559,291 (+)NCBIHuRef
CHM1_14153,679,080 - 153,811,057 (+)NCBICHM1_1
T2T-CHM13v2.04156,103,024 - 156,235,555 (+)NCBIT2T-CHM13v2.0
Arfip1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39384,403,400 - 84,490,075 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl384,403,733 - 85,794,825 (-)EnsemblGRCm39 Ensembl
GRCm39 Ensembl384,403,400 - 84,489,932 (-)EnsemblGRCm39 Ensembl
GRCm38384,496,093 - 84,582,751 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl384,496,426 - 85,887,518 (-)EnsemblGRCm38mm10GRCm38
GRCm38.p6 Ensembl384,496,093 - 84,582,625 (-)EnsemblGRCm38mm10GRCm38
MGSCv37384,299,985 - 84,390,065 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36384,581,990 - 84,672,070 (-)NCBIMGSCv36mm8
Celera384,506,047 - 84,596,205 (-)NCBICelera
Cytogenetic Map3F1NCBI
cM Map337.7NCBI
Arfip1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82172,141,862 - 172,224,464 (-)NCBIGRCr8
mRatBN7.22169,843,804 - 169,924,136 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2169,843,801 - 169,923,142 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2177,023,758 - 177,101,869 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02175,043,657 - 175,121,767 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02169,645,180 - 169,723,285 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02183,503,250 - 183,582,798 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2183,504,330 - 183,582,553 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02202,911,579 - 202,991,075 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42176,275,425 - 176,353,675 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12176,225,530 - 176,303,781 (-)NCBI
Celera2163,843,358 - 163,921,484 (-)NCBICelera
Cytogenetic Map2q34NCBI
Arfip1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554717,238,456 - 7,351,055 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554717,238,456 - 7,349,767 (+)NCBIChiLan1.0ChiLan1.0
ARFIP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v23150,665,301 - 150,798,214 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan14151,020,811 - 151,153,701 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v04145,119,881 - 145,252,601 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14156,770,384 - 156,901,754 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4156,770,510 - 156,901,754 (+)Ensemblpanpan1.1panPan2
ARFIP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11550,618,392 - 50,756,300 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1550,618,087 - 50,755,339 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1550,965,110 - 51,103,001 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01551,305,012 - 51,443,008 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1551,304,708 - 51,441,280 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11550,567,205 - 50,699,297 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01550,666,679 - 50,804,559 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01550,977,655 - 51,115,571 (+)NCBIUU_Cfam_GSD_1.0
Arfip1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530139,750,432 - 39,859,883 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366892,671,424 - 2,780,814 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366892,671,204 - 2,781,107 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ARFIP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl876,168,403 - 76,270,609 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1876,168,731 - 76,270,554 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2880,737,499 - 80,791,563 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ARFIP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1799,341,992 - 99,467,715 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl799,341,905 - 99,468,909 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603778,991,937 - 79,118,394 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_004869191 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_004869192 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_004869193 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_004869195 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_004869197 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013067230 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013067231 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021247897 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021247898 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021247899 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021247901 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021247902 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021247903 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01092773 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GEBF01002523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JH171101 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSHGLT00000002209   ⟹   ENSHGLP00000002161
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248584,193,357 - 4,299,652 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000002210   ⟹   ENSHGLP00000002162
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248584,212,724 - 4,299,652 (+)Ensembl
RefSeq Acc Id: XM_004869191   ⟹   XP_004869248
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248584,193,418 - 4,299,440 (+)NCBI
RefSeq Acc Id: XM_004869192   ⟹   XP_004869249
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248584,193,420 - 4,299,440 (+)NCBI
RefSeq Acc Id: XM_004869193   ⟹   XP_004869250
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248584,208,646 - 4,299,445 (+)NCBI
RefSeq Acc Id: XM_004869195   ⟹   XP_004869252
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248584,193,507 - 4,299,445 (+)NCBI
RefSeq Acc Id: XM_004869197   ⟹   XP_004869254
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248584,193,507 - 4,299,445 (+)NCBI
RefSeq Acc Id: XM_013067230   ⟹   XP_012922684
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248584,236,567 - 4,299,445 (+)NCBI
RefSeq Acc Id: XM_013067231   ⟹   XP_012922685
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248584,193,507 - 4,299,445 (+)NCBI
RefSeq Acc Id: XM_021247897   ⟹   XP_021103556
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248584,193,507 - 4,299,445 (+)NCBI
RefSeq Acc Id: XM_021247898   ⟹   XP_021103557
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248584,193,420 - 4,299,440 (+)NCBI
RefSeq Acc Id: XM_021247899   ⟹   XP_021103558
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248584,193,507 - 4,299,445 (+)NCBI
RefSeq Acc Id: XM_021247901   ⟹   XP_021103560
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248584,193,418 - 4,299,440 (+)NCBI
RefSeq Acc Id: XM_021247902   ⟹   XP_021103561
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248584,193,420 - 4,299,440 (+)NCBI
RefSeq Acc Id: XM_021247903   ⟹   XP_021103562
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248584,193,507 - 4,299,445 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_004869248   ⟸   XM_004869191
- Peptide Label: isoform X1
RefSeq Acc Id: XP_021103560   ⟸   XM_021247901
- Peptide Label: isoform X7
RefSeq Acc Id: XP_004869249   ⟸   XM_004869192
- Peptide Label: isoform X1
RefSeq Acc Id: XP_021103557   ⟸   XM_021247898
- Peptide Label: isoform X3
- UniProtKB: G5BMJ6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021103561   ⟸   XM_021247902
- Peptide Label: isoform X7
RefSeq Acc Id: XP_021103556   ⟸   XM_021247897
- Peptide Label: isoform X2
RefSeq Acc Id: XP_012922685   ⟸   XM_013067231
- Peptide Label: isoform X5
RefSeq Acc Id: XP_021103558   ⟸   XM_021247899
- Peptide Label: isoform X6
RefSeq Acc Id: XP_004869252   ⟸   XM_004869195
- Peptide Label: isoform X3
- UniProtKB: G5BMJ6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004869254   ⟸   XM_004869197
- Peptide Label: isoform X7
RefSeq Acc Id: XP_021103562   ⟸   XM_021247903
- Peptide Label: isoform X8
RefSeq Acc Id: XP_004869250   ⟸   XM_004869193
- Peptide Label: isoform X1
RefSeq Acc Id: XP_012922684   ⟸   XM_013067230
- Peptide Label: isoform X4
RefSeq Acc Id: ENSHGLP00000002161   ⟸   ENSHGLT00000002209
RefSeq Acc Id: ENSHGLP00000002162   ⟸   ENSHGLT00000002210


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000001642 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000002209 ENTREZGENE
  ENSHGLT00000002210 ENTREZGENE
Gene3D-CATH 1.20.1270.60 UniProtKB/TrEMBL
InterPro AH/BAR_dom_sf UniProtKB/TrEMBL
  AH_dom UniProtKB/TrEMBL
  Arfaptin_fam UniProtKB/TrEMBL
NCBI Gene Arfip1 ENTREZGENE
PANTHER PTHR12141 UniProtKB/TrEMBL
  PTHR12141:SF4 UniProtKB/TrEMBL
Pfam Arfaptin UniProtKB/TrEMBL
PROSITE PS50870 UniProtKB/TrEMBL
SMART Arfaptin UniProtKB/TrEMBL
Superfamily-SCOP SSF103657 UniProtKB/TrEMBL
UniProt G5BMJ6 ENTREZGENE, UniProtKB/TrEMBL