Mitd1 (microtubule interacting and trafficking domain containing 1) - Rat Genome Database

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Gene: Mitd1 (microtubule interacting and trafficking domain containing 1) Heterocephalus glaber
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Symbol: Mitd1
Name: microtubule interacting and trafficking domain containing 1
RGD ID: 18931160
Description: ENCODES a protein that exhibits identical protein binding (ortholog); phosphatidylinositol binding (ortholog); protein domain specific binding (ortholog); INVOLVED IN midbody abscission (ortholog); mitotic cytokinesis (ortholog); multivesicular body sorting pathway (ortholog); ASSOCIATED WITH Cardiovascular Abnormalities (ortholog); Failure to Thrive (ortholog); genetic disease (ortholog); FOUND IN intracellular membrane-bounded organelle (ortholog); membrane (ortholog); midbody (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: MIT domain-containing protein 1; MIT, microtubule interacting and transport, domain containing 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247494,172,007 - 4,185,890 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247494,166,358 - 4,185,980 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Mitd1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247494,172,007 - 4,185,890 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247494,166,358 - 4,185,980 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
MITD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38299,161,427 - 99,181,058 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl299,161,427 - 99,181,058 (-)EnsemblGRCh38hg38GRCh38
GRCh37299,785,726 - 99,797,521 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36299,152,158 - 99,163,924 (-)NCBINCBI36Build 36hg18NCBI36
Celera293,990,319 - 94,002,087 (-)NCBICelera
Cytogenetic Map2q11.2NCBI
HuRef293,551,497 - 93,563,265 (-)NCBIHuRef
CHM1_1299,790,624 - 99,802,390 (-)NCBICHM1_1
T2T-CHM13v2.0299,620,306 - 99,639,936 (-)NCBIT2T-CHM13v2.0
Mitd1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39137,913,882 - 37,929,530 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl137,913,882 - 37,929,492 (-)EnsemblGRCm39 Ensembl
GRCm38137,874,801 - 37,890,449 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl137,874,801 - 37,890,411 (-)EnsemblGRCm38mm10GRCm38
MGSCv37137,935,735 - 37,947,256 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36137,823,275 - 37,834,979 (-)NCBIMGSCv36mm8
Celera137,659,809 - 37,671,331 (-)NCBICelera
Cytogenetic Map1BNCBI
cM Map116.13NCBI
Mitd1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8947,609,743 - 47,621,033 (-)NCBIGRCr8
mRatBN7.2940,113,943 - 40,125,280 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl940,113,946 - 40,125,289 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx948,609,792 - 48,621,053 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0953,732,547 - 53,743,808 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0952,014,641 - 52,025,935 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0944,472,364 - 44,483,723 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl944,472,365 - 44,560,837 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0944,169,744 - 44,181,102 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4936,827,857 - 36,839,148 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1936,829,271 - 36,840,562 (-)NCBI
Celera937,868,172 - 37,879,466 (-)NCBICelera
Cytogenetic Map9q21NCBI
Mitd1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554705,493,144 - 5,509,437 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554705,493,361 - 5,509,437 (-)NCBIChiLan1.0ChiLan1.0
MITD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21229,248,958 - 29,263,284 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A29,251,722 - 29,266,044 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A100,116,263 - 100,130,580 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A100,097,758 - 100,111,589 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A100,097,758 - 100,111,589 (-)Ensemblpanpan1.1panPan2
MITD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11043,513,240 - 43,525,543 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1043,513,277 - 43,523,883 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1043,436,787 - 43,456,434 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01044,385,417 - 44,405,067 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1044,385,431 - 44,398,060 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11044,095,468 - 44,115,110 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01044,378,979 - 44,391,206 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01044,563,444 - 44,583,084 (+)NCBIUU_Cfam_GSD_1.0
Mitd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629284,937,949 - 84,949,823 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366611,618,975 - 1,633,278 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366611,619,703 - 1,632,558 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MITD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl355,054,517 - 55,069,866 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1355,054,475 - 55,078,180 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2357,688,426 - 57,703,819 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MITD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1142,894,096 - 2,902,790 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666041170,496,653 - 170,506,461 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000007048   ⟹   ENSHGLP00000006964
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247494,172,007 - 4,185,890 (-)Ensembl
RefSeq Acc Id: XM_021258064   ⟹   XP_021113723
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247494,171,548 - 4,185,980 (-)NCBI
RefSeq Acc Id: XM_021258065   ⟹   XP_021113724
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247494,166,358 - 4,185,980 (-)NCBI
RefSeq Acc Id: XM_021258066   ⟹   XP_021113725
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247494,171,546 - 4,185,980 (-)NCBI
Protein Sequences
Protein RefSeqs XP_021113723 (Get FASTA)   NCBI Sequence Viewer  
  XP_021113724 (Get FASTA)   NCBI Sequence Viewer  
  XP_021113725 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB10591 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000006964
  ENSHGLP00100050008
GenBank Protein JAO01933 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_021113724   ⟸   XM_021258065
- Peptide Label: isoform X2
RefSeq Acc Id: XP_021113725   ⟸   XM_021258066
- Peptide Label: isoform X3
RefSeq Acc Id: XP_021113723   ⟸   XM_021258064
- Peptide Label: isoform X1
- UniProtKB: G5BMT0 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000006964   ⟸   ENSHGLT00000007048


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000005087 Ensembl, ENTREZGENE
  ENSHGLG00100015622 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000007048 ENTREZGENE
  ENSHGLT00100072093 UniProtKB/TrEMBL
Gene3D-CATH 3.30.870.30 UniProtKB/TrEMBL
  Phosphotransferase system, lactose/cellobiose-type IIA subunit UniProtKB/TrEMBL
InterPro MIT_dom UniProtKB/TrEMBL
  MIT_dom_sf UniProtKB/TrEMBL
  MIT_domain_contain_protein1 UniProtKB/TrEMBL
  MITD1_C UniProtKB/TrEMBL
  MITD1_C_sf UniProtKB/TrEMBL
  MITD1_N UniProtKB/TrEMBL
NCBI Gene Mitd1 ENTREZGENE
PANTHER MIT DOMAIN-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
  UNCHARACTERIZED UniProtKB/TrEMBL
Pfam MIT UniProtKB/TrEMBL
  MIT_C UniProtKB/TrEMBL
SMART MIT UniProtKB/TrEMBL
Superfamily-SCOP SSF116846 UniProtKB/TrEMBL
UniProt A0AAX6SXH3_HETGA UniProtKB/TrEMBL
  A0AAX6T176_HETGA UniProtKB/TrEMBL
  G5BMT0 ENTREZGENE, UniProtKB/TrEMBL