Cetn3 (centrin 3) - Rat Genome Database

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Gene: Cetn3 (centrin 3) Heterocephalus glaber
Analyze
Symbol: Cetn3
Name: centrin 3
RGD ID: 18931153
Description: ENCODES a protein that exhibits G-protein beta/gamma-subunit complex binding (ortholog); microtubule binding (ortholog); ASSOCIATED WITH familial adenomatous polyposis 1 (ortholog); Hereditary Neoplastic Syndromes (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN centriole (ortholog); centrosome (ortholog); ciliary basal body (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: centrin-3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247439,661,857 - 9,677,599 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247439,663,281 - 9,677,626 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Cetn3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247439,661,857 - 9,677,599 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247439,663,281 - 9,677,626 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
CETN3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38590,392,257 - 90,409,756 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl590,392,257 - 90,409,766 (-)EnsemblGRCh38hg38GRCh38
GRCh37589,688,074 - 89,705,573 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36589,725,284 - 89,741,359 (-)NCBINCBI36Build 36hg18NCBI36
Build 34589,725,286 - 89,741,359NCBI
Celera585,591,376 - 85,607,451 (-)NCBICelera
Cytogenetic Map5q14.3NCBI
HuRef584,900,167 - 84,916,242 (-)NCBIHuRef
CHM1_1589,122,207 - 89,138,285 (-)NCBICHM1_1
T2T-CHM13v2.0590,878,812 - 90,896,306 (-)NCBIT2T-CHM13v2.0
Cetn3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391381,928,201 - 81,945,274 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1381,931,196 - 81,945,274 (+)EnsemblGRCm39 Ensembl
GRCm381381,780,636 - 81,797,155 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1381,783,077 - 81,797,155 (+)EnsemblGRCm38mm10GRCm38
MGSCv371381,922,291 - 81,936,156 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361382,260,629 - 82,274,494 (+)NCBIMGSCv36mm8
Celera1384,040,605 - 84,054,471 (+)NCBICelera
Cytogenetic Map13C3NCBI
cM Map1343.68NCBI
Cetn3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8213,817,760 - 13,837,502 (+)NCBIGRCr8
mRatBN7.2212,089,025 - 12,101,828 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl212,089,226 - 12,101,828 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx219,202,033 - 19,214,399 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0217,301,555 - 17,313,921 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0211,958,922 - 11,971,333 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0212,101,473 - 12,115,009 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl212,102,487 - 12,115,009 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl29,683,570 - 9,696,050 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0211,965,387 - 11,977,798 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.429,909,950 - 9,922,361 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.129,835,782 - 9,846,214 (+)NCBI
Celera28,442,073 - 8,454,484 (+)NCBICelera
Cytogenetic Map2q11NCBI
Cetn3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541821,206,387 - 21,222,456 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541821,206,387 - 21,220,984 (+)NCBIChiLan1.0ChiLan1.0
CETN3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2424,989,521 - 25,005,413 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1523,143,141 - 23,159,033 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0524,965,172 - 24,981,259 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1525,098,973 - 25,114,676 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl525,098,973 - 25,114,676 (+)Ensemblpanpan1.1panPan2
CETN3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1318,529,198 - 18,547,195 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl318,529,240 - 18,547,069 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha319,896,446 - 19,915,446 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0318,433,800 - 18,452,784 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl318,433,834 - 18,453,058 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1318,408,918 - 18,427,898 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0318,374,708 - 18,393,706 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0318,663,156 - 18,682,119 (+)NCBIUU_Cfam_GSD_1.0
Cetn3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213174,109,017 - 174,124,187 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364698,501,552 - 8,516,927 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364698,501,572 - 8,516,722 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CETN3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl297,572,449 - 97,593,291 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1297,574,003 - 97,593,320 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22100,651,981 - 100,671,290 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CETN3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1484,334,503 - 84,350,269 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl484,334,533 - 84,350,276 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604933,392,231 - 33,407,996 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000007570   ⟹   ENSHGLP00000007485
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247439,661,857 - 9,677,599 (-)Ensembl
RefSeq Acc Id: XM_004841673   ⟹   XP_004841730
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247439,663,281 - 9,677,626 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004841730 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000007485
GenBank Protein JAO02328 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_004841730   ⟸   XM_004841673
- UniProtKB: A0A0P6JXV4 (UniProtKB/TrEMBL),   G5BBF8 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000007485   ⟸   ENSHGLT00000007570


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000005441 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000007570 ENTREZGENE
Gene3D-CATH EF-hand UniProtKB/TrEMBL
InterPro Calmodulin_Centrin_Ca-Bind UniProtKB/TrEMBL
  EF-hand-dom_pair UniProtKB/TrEMBL
  EF_Hand_1_Ca_BS UniProtKB/TrEMBL
  EF_hand_dom UniProtKB/TrEMBL
KEGG Report hgl:101720737 UniProtKB/TrEMBL
NCBI Gene Cetn3 ENTREZGENE
PANTHER CALCIUM BINDING PROTEIN UniProtKB/TrEMBL
  CENTRIN-3 UniProtKB/TrEMBL
Pfam EF-hand_7 UniProtKB/TrEMBL
PROSITE EF_HAND_1 UniProtKB/TrEMBL
  EF_HAND_2 UniProtKB/TrEMBL
SMART EFh UniProtKB/TrEMBL
Superfamily-SCOP SSF47473 UniProtKB/TrEMBL
UniProt A0A0P6JXV4 ENTREZGENE, UniProtKB/TrEMBL
  G5BBF8 ENTREZGENE, UniProtKB/TrEMBL