Slc35f1 (solute carrier family 35 member F1) - Rat Genome Database

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Gene: Slc35f1 (solute carrier family 35 member F1) Heterocephalus glaber
Analyze
Symbol: Slc35f1
Name: solute carrier family 35 member F1
RGD ID: 18931038
Description: ASSOCIATED WITH atrial fibrillation (ortholog); autistic disorder (ortholog); congenital disorder of glycosylation Iaa (ortholog); FOUND IN synaptic vesicle membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462479811,683,337 - 12,000,021 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462479811,680,474 - 12,000,007 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:22301074  


Genomics

Comparative Map Data
Slc35f1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462479811,683,337 - 12,000,021 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462479811,680,474 - 12,000,007 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
SLC35F1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386117,907,264 - 118,317,671 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6117,907,264 - 118,317,676 (+)EnsemblGRCh38hg38GRCh38
GRCh376118,228,427 - 118,638,834 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 366118,335,382 - 118,745,524 (+)NCBINCBI36Build 36hg18NCBI36
Celera6118,971,646 - 119,382,119 (+)NCBICelera
Cytogenetic Map6q22.2-q22.31NCBI
HuRef6115,810,419 - 116,220,605 (+)NCBIHuRef
CHM1_16118,492,503 - 118,903,030 (+)NCBICHM1_1
T2T-CHM13v2.06119,091,523 - 119,502,777 (+)NCBIT2T-CHM13v2.0
Slc35f1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391052,566,597 - 52,987,718 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1052,566,629 - 52,987,718 (+)EnsemblGRCm39 Ensembl
GRCm381052,690,501 - 53,111,622 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1052,690,533 - 53,111,622 (+)EnsemblGRCm38mm10GRCm38
MGSCv371052,410,307 - 52,831,428 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361052,379,020 - 52,799,820 (+)NCBIMGSCv36mm8
Celera1053,520,703 - 53,940,827 (+)NCBICelera
Cytogenetic Map10B3NCBI
cM Map1026.79NCBI
Slc35f1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82032,573,091 - 32,961,466 (+)NCBIGRCr8
mRatBN7.22032,030,350 - 32,418,762 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2032,030,368 - 32,418,611 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2033,035,343 - 33,430,558 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02032,426,256 - 32,821,484 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02033,156,335 - 33,550,367 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02033,772,314 - 34,420,970 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2034,258,791 - 34,420,824 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02036,017,841 - 36,174,326 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.02035,547,207 - 35,550,654 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42031,621,873 - 31,770,094 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2033,423,045 - 33,810,001 (+)NCBICelera
Cytogenetic Map20q11NCBI
Slc35f1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554361,182,392 - 1,312,183 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554361,096,156 - 1,312,183 (+)NCBIChiLan1.0ChiLan1.0
SLC35F1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25137,923,742 - 138,333,315 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16135,816,765 - 136,226,294 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06115,718,178 - 116,127,742 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16120,108,341 - 120,268,465 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6120,108,341 - 120,268,465 (+)Ensemblpanpan1.1panPan2
SLC35F1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1158,010,752 - 58,397,987 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl158,010,752 - 58,397,987 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha158,813,727 - 59,200,879 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0158,195,171 - 58,581,763 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl158,195,171 - 58,584,852 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1158,096,113 - 58,483,248 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0157,937,032 - 58,324,271 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0158,568,680 - 58,956,252 (+)NCBIUU_Cfam_GSD_1.0
Slc35f1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946108,969,383 - 109,131,396 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366581,076,196 - 1,238,276 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936658851,751 - 1,238,263 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC35F1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl143,653,460 - 43,837,390 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1143,653,453 - 44,057,851 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2148,982,795 - 49,188,744 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC35F1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11355,556,862 - 55,955,502 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1355,554,744 - 55,719,375 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604027,864,115 - 28,280,919 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000004398   ⟹   ENSHGLP00000004338
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462479811,683,337 - 12,000,021 (-)Ensembl
RefSeq Acc Id: XM_004860187   ⟹   XP_004860244
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462479811,680,474 - 12,000,004 (-)NCBI
RefSeq Acc Id: XM_021240623   ⟹   XP_021096282
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462479811,696,960 - 12,000,007 (-)NCBI
RefSeq Acc Id: XM_021240624   ⟹   XP_021096283
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462479811,694,485 - 12,000,006 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004860244 (Get FASTA)   NCBI Sequence Viewer  
  XP_021096282 (Get FASTA)   NCBI Sequence Viewer  
  XP_021096283 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB06656 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000004338
RefSeq Acc Id: XP_004860244   ⟸   XM_004860187
- Peptide Label: isoform X1
RefSeq Acc Id: XP_021096283   ⟸   XM_021240624
- Peptide Label: isoform X3
RefSeq Acc Id: XP_021096282   ⟸   XM_021240623
- Peptide Label: isoform X2
Ensembl Acc Id: ENSHGLP00000004338   ⟸   ENSHGLT00000004398


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000003172 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000004398 ENTREZGENE
NCBI Gene Slc35f1 ENTREZGENE