Copz1 (COPI coat complex subunit zeta 1) - Rat Genome Database

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Gene: Copz1 (COPI coat complex subunit zeta 1) Heterocephalus glaber
Analyze
Symbol: Copz1
Name: COPI coat complex subunit zeta 1 (Ensembl:coatomer protein complex subunit zeta 1)
RGD ID: 18930955
Description: INVOLVED IN intra-Golgi vesicle-mediated transport (inferred); intracellular protein transport (inferred); protein transport (inferred); ASSOCIATED WITH genetic disease (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN COPI vesicle coat (inferred); COPI-coated vesicle membrane (inferred); cytoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: coatomer protein complex subunit zeta 1; coatomer subunit zeta-1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249042,350,989 - 2,372,824 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249042,351,010 - 2,374,284 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Copz1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249042,350,989 - 2,372,824 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249042,351,010 - 2,374,284 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
COPZ1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381254,325,131 - 54,351,846 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1254,301,202 - 54,351,846 (+)EnsemblGRCh38hg38GRCh38
GRCh371254,718,915 - 54,745,630 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361253,005,178 - 53,031,900 (+)NCBINCBI36Build 36hg18NCBI36
Build 341253,005,177 - 53,031,900NCBI
Celera1254,370,906 - 54,397,483 (+)NCBICelera
Cytogenetic Map12q13.13NCBI
HuRef1251,758,072 - 51,784,766 (+)NCBIHuRef
CHM1_11254,685,611 - 54,712,337 (+)NCBICHM1_1
T2T-CHM13v2.01254,291,719 - 54,318,429 (+)NCBIT2T-CHM13v2.0
Copz1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3915103,181,261 - 103,208,295 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl15103,181,141 - 103,208,295 (+)EnsemblGRCm39 Ensembl
GRCm3815103,272,888 - 103,299,865 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl15103,272,714 - 103,299,868 (+)EnsemblGRCm38mm10GRCm38
MGSCv3715103,103,349 - 103,130,296 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3615103,100,952 - 103,127,899 (+)NCBIMGSCv36mm8
Celera15105,435,330 - 105,462,717 (+)NCBICelera
Cytogenetic Map15F3NCBI
cM Map1558.74NCBI
Copz1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87136,287,696 - 136,314,131 (+)NCBIGRCr8
mRatBN7.27134,409,523 - 134,435,661 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7134,409,799 - 134,435,662 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7136,164,951 - 136,190,861 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07138,394,318 - 138,420,227 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07138,380,360 - 138,406,447 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07144,900,050 - 144,926,299 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7144,899,534 - 144,926,350 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07142,680,779 - 142,706,987 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47142,184,081 - 142,209,955 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17142,264,119 - 142,289,000 (+)NCBI
Celera7130,835,003 - 130,860,877 (+)NCBICelera
Cytogenetic Map7q36NCBI
Copz1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554581,568,968 - 1,595,026 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554581,569,077 - 1,592,851 (+)NCBIChiLan1.0ChiLan1.0
COPZ1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21039,819,646 - 39,846,382 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11239,816,412 - 39,843,147 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01234,392,373 - 34,419,119 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11235,117,991 - 35,145,050 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1235,117,991 - 35,145,050 (-)Ensemblpanpan1.1panPan2
COPZ1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.127963,047 - 983,102 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2745,272,316 - 45,292,137 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.027960,458 - 979,850 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl27960,663 - 979,776 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.127978,807 - 998,914 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.027960,817 - 980,538 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02745,676,211 - 45,695,959 (+)NCBIUU_Cfam_GSD_1.0
Copz1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494561,620,109 - 61,644,778 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493651211,520,095 - 11,544,720 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493651211,520,085 - 11,544,722 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
COPZ1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl519,522,613 - 19,542,372 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1519,522,567 - 19,542,373 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2520,379,779 - 20,399,559 (+)NCBISscrofa10.2Sscrofa10.2susScr3
COPZ1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11150,440,961 - 50,468,457 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1150,441,026 - 50,467,199 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037195,572,494 - 195,599,605 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_004872794 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01102329 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSHGLT00000005724   ⟹   ENSHGLP00000005652
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046249042,350,989 - 2,372,824 (+)Ensembl
RefSeq Acc Id: XM_004872794   ⟹   XP_004872851
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046249042,351,010 - 2,374,284 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004872851 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000005652
  ENSHGLP00100029564
Reference Protein Sequences
RefSeq Acc Id: XP_004872851   ⟸   XM_004872794
- UniProtKB: A0A0P6K1M2 (UniProtKB/TrEMBL),   G5BID5 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000005652   ⟸   ENSHGLT00000005724


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000004132 Ensembl, ENTREZGENE
  ENSHGLG00100009567 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000005724 ENTREZGENE
  ENSHGLT00100084723 UniProtKB/TrEMBL
Gene3D-CATH 3.30.450.60 UniProtKB/TrEMBL
InterPro AP_mu_sigma_su UniProtKB/TrEMBL
  Clathrin_sm-chain_CS UniProtKB/TrEMBL
  Coatomer_zeta UniProtKB/TrEMBL
  Longin-like_dom_sf UniProtKB/TrEMBL
KEGG Report hgl:101712626 UniProtKB/TrEMBL
NCBI Gene Copz1 ENTREZGENE
PANTHER COATOMER SUBUNIT ZETA-1 UniProtKB/TrEMBL
  PTHR11043 UniProtKB/TrEMBL
Pfam Clat_adaptor_s UniProtKB/TrEMBL
PROSITE CLAT_ADAPTOR_S UniProtKB/TrEMBL
Superfamily-SCOP SSF64356 UniProtKB/TrEMBL
UniProt A0A0P6K1M2 ENTREZGENE, UniProtKB/TrEMBL
  G5BID5 ENTREZGENE, UniProtKB/TrEMBL