Rbm34 (RNA binding motif protein 34) - Rat Genome Database

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Gene: Rbm34 (RNA binding motif protein 34) Heterocephalus glaber
Analyze
Symbol: Rbm34
Name: RNA binding motif protein 34
RGD ID: 18930754
Description: ENCODES a protein that exhibits RNA binding (inferred); ASSOCIATED WITH common variable immunodeficiency 14 (ortholog); gastrointestinal stromal tumor (ortholog); genetic disease (ortholog); FOUND IN chromosome (inferred); nucleolus (inferred); nucleoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: RNA-binding protein 34
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477515,304,205 - 15,325,344 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477515,293,143 - 15,325,344 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
chromosome  (IEA)
nucleolus  (IEA)
nucleoplasm  (IEA)

Molecular Function
RNA binding  (IEA)

References
Additional References at PubMed
PMID:21993625   PMID:22301074  


Genomics

Comparative Map Data
Rbm34
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477515,304,205 - 15,325,344 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477515,293,143 - 15,325,344 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
RBM34
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381235,131,183 - 235,161,250 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1235,131,183 - 235,161,283 (-)EnsemblGRCh38hg38GRCh38
GRCh371235,294,498 - 235,324,565 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361233,361,572 - 233,391,194 (-)NCBINCBI36Build 36hg18NCBI36
Celera1208,537,121 - 208,567,232 (-)NCBICelera
Cytogenetic Map1q42.3NCBI
HuRef1205,743,078 - 205,773,006 (-)NCBIHuRef
CHM1_11236,566,820 - 236,596,900 (-)NCBICHM1_1
T2T-CHM13v2.01234,522,898 - 234,552,956 (-)NCBIT2T-CHM13v2.0
Rbm34
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398127,673,922 - 127,697,799 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8127,673,922 - 127,697,821 (-)EnsemblGRCm39 Ensembl
GRCm388126,947,172 - 126,971,127 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8126,947,172 - 126,971,071 (-)EnsemblGRCm38mm10GRCm38
MGSCv378129,471,072 - 129,494,979 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv368129,833,262 - 129,857,169 (-)NCBIMGSCv36mm8
Celera8131,263,287 - 131,287,183 (-)NCBICelera
Cytogenetic Map8E2NCBI
cM Map874.64NCBI
Rbm34
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81971,832,189 - 71,854,038 (-)NCBIGRCr8
mRatBN7.21954,936,516 - 54,956,810 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1954,936,531 - 54,956,715 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1961,726,589 - 61,746,792 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01962,586,490 - 62,606,693 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01964,669,028 - 64,689,216 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01959,874,745 - 59,894,981 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1959,874,752 - 59,894,937 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01970,541,736 - 70,562,213 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41956,864,501 - 56,885,217 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11956,869,567 - 56,890,277 (-)NCBI
Celera1954,275,935 - 54,296,237 (-)NCBICelera
Cytogenetic Map19q12NCBI
Rbm34
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554924,733,800 - 4,754,069 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554924,732,249 - 4,754,433 (+)NCBIChiLan1.0ChiLan1.0
RBM34
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2114,030,987 - 14,062,633 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1114,243,091 - 14,273,555 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01210,676,840 - 210,706,360 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11215,695,090 - 215,723,466 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1215,695,166 - 215,723,408 (-)Ensemblpanpan1.1panPan2
RBM34
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.144,755,574 - 4,780,963 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl44,755,620 - 4,780,958 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha44,738,127 - 4,763,520 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.044,777,806 - 4,803,174 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl44,777,832 - 4,803,172 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.144,788,616 - 4,814,002 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.044,906,229 - 4,931,599 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.045,127,935 - 5,153,322 (+)NCBIUU_Cfam_GSD_1.0
Rbm34
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934441,096,471 - 41,116,009 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648417,260,907 - 17,281,273 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648417,261,715 - 17,281,240 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ARID4B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1456,085,353 - 56,108,141 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11456,087,685 - 56,108,141 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21460,193,268 - 60,213,712 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RBM34
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12572,306,821 - 72,335,619 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2572,304,264 - 72,334,359 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605574,337,488 - 74,368,049 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000023346   ⟹   ENSHGLP00000023131
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462477515,304,205 - 15,325,344 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000023347   ⟹   ENSHGLP00000023132
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462477515,304,311 - 15,325,056 (+)Ensembl
RefSeq Acc Id: XM_004854625   ⟹   XP_004854682
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462477515,293,143 - 15,325,344 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004854682 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHA97482 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000023131
  ENSHGLP00100031808
GenBank Protein JAO02398 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_004854682   ⟸   XM_004854625
- UniProtKB: G5AKC2 (UniProtKB/TrEMBL),   A0A0N8EUL6 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000023132   ⟸   ENSHGLT00000023347
RefSeq Acc Id: ENSHGLP00000023131   ⟸   ENSHGLT00000023346


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000016495 Ensembl, ENTREZGENE
  ENSHGLG00100014678 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000023346 ENTREZGENE
  ENSHGLT00100045432 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.330 UniProtKB/TrEMBL
InterPro Nucleotide-bd_a/b_plait_sf UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/TrEMBL
  RBM34_RRM2 UniProtKB/TrEMBL
  RRM_dom UniProtKB/TrEMBL
KEGG Report hgl:101698882 UniProtKB/TrEMBL
NCBI Gene Rbm34 ENTREZGENE
PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H UniProtKB/TrEMBL
Pfam RRM_1 UniProtKB/TrEMBL
PROSITE RRM UniProtKB/TrEMBL
SMART RRM UniProtKB/TrEMBL
Superfamily-SCOP SSF54928 UniProtKB/TrEMBL
UniProt A0A0N8EUL6 ENTREZGENE, UniProtKB/TrEMBL
  G5AKC2 ENTREZGENE, UniProtKB/TrEMBL