Mgat2 (alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase) - Rat Genome Database

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Gene: Mgat2 (alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase) Heterocephalus glaber
Analyze
Symbol: Mgat2
Name: alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase
RGD ID: 18930491
Description: ENCODES a protein that exhibits alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity (ortholog); carbohydrate binding (ortholog); manganese ion binding (ortholog); INVOLVED IN protein N-linked glycosylation via asparagine (ortholog); ASSOCIATED WITH Brain-Lung-Thyroid Syndrome (ortholog); congenital disorder of glycosylation (ortholog); congenital disorder of glycosylation type IIa (ortholog); FOUND IN cytoplasmic side of rough endoplasmic reticulum membrane (ortholog); large ribosomal subunit (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473119,081,110 - 19,082,453 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473119,080,986 - 19,082,887 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Mgat2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473119,081,110 - 19,082,453 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473119,080,986 - 19,082,887 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
MGAT2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381449,620,799 - 49,623,481 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1449,620,799 - 49,623,481 (+)EnsemblGRCh38hg38GRCh38
GRCh371450,087,517 - 50,090,199 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361449,157,239 - 49,159,949 (+)NCBINCBI36Build 36hg18NCBI36
Build 341449,157,246 - 49,159,924NCBI
Celera1429,947,307 - 29,950,017 (+)NCBICelera
Cytogenetic Map14q21.3NCBI
HuRef1430,204,620 - 30,207,330 (+)NCBIHuRef
CHM1_11450,026,493 - 50,029,203 (+)NCBICHM1_1
T2T-CHM13v2.01443,819,023 - 43,821,705 (+)NCBIT2T-CHM13v2.0
Mgat2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391269,230,932 - 69,233,547 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1269,230,931 - 69,233,544 (+)EnsemblGRCm39 Ensembl
GRCm381269,184,158 - 69,186,773 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1269,184,157 - 69,186,770 (+)EnsemblGRCm38mm10GRCm38
MGSCv371270,285,145 - 70,287,760 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361270,102,818 - 70,104,852 (+)NCBIMGSCv36mm8
Celera1270,275,998 - 70,278,613 (+)NCBICelera
Cytogenetic Map12C2NCBI
cM Map1228.73NCBI
Mgat2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8693,392,416 - 93,394,905 (+)NCBIGRCr8
mRatBN7.2687,656,360 - 87,658,849 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl687,656,349 - 87,658,177 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx688,056,244 - 88,058,733 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0688,355,679 - 88,358,168 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0687,795,430 - 87,797,919 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0691,476,698 - 91,479,187 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl691,476,698 - 91,479,183 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06100,935,605 - 100,938,094 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4691,137,262 - 91,139,751 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1691,140,717 - 91,143,203 (+)NCBI
Celera686,155,587 - 86,158,076 (+)NCBICelera
Cytogenetic Map6q24NCBI
Mgat2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540913,030,569 - 13,031,912 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540913,029,578 - 13,032,406 (-)NCBIChiLan1.0ChiLan1.0
MGAT2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21550,745,231 - 50,747,895 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11449,961,730 - 49,964,401 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01430,199,011 - 30,201,566 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11448,508,936 - 48,511,644 (+)NCBIpanpan1.1PanPan1.1panPan2
MGAT2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1826,244,894 - 26,247,960 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl826,245,407 - 26,246,747 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha825,999,094 - 26,001,888 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0826,423,188 - 26,425,981 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl826,423,230 - 26,425,166 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1826,078,562 - 26,081,356 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0826,152,187 - 26,154,981 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0826,469,320 - 26,472,110 (+)NCBIUU_Cfam_GSD_1.0
Mgat2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864058,288,862 - 58,292,089 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936583398,190 - 399,533 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936583396,787 - 399,697 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MGAT2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1179,477,992 - 179,479,801 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11179,478,464 - 179,479,804 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21199,864,843 - 199,866,183 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Pig Cytomap1q23-q27NCBI
MGAT2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12426,660,554 - 26,663,264 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2426,661,049 - 26,662,392 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605314,976,920 - 14,979,602 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000029067   ⟹   ENSHGLP00000028551
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462473119,081,110 - 19,082,453 (-)Ensembl
RefSeq Acc Id: XM_004835594   ⟹   XP_004835651
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473119,080,986 - 19,082,887 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004835651 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB13526 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000028551
Reference Protein Sequences
RefSeq Acc Id: XP_004835651   ⟸   XM_004835594
- UniProtKB: G5BW66 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000028551   ⟸   ENSHGLT00000029067


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000020857 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000029067 ENTREZGENE
InterPro GlcNAc_II UniProtKB/TrEMBL
  Nucleotide-diphossugar_trans UniProtKB/TrEMBL
NCBI Gene Mgat2 ENTREZGENE
PANTHER ALPHA-1,6-MANNOSYL-GLYCOPROTEIN 2-BETA-N-ACETYLGLUCOSAMINYLTRANSFERASE UniProtKB/TrEMBL
  BETA-1,2-N-ACETYLGLUCOSAMINYLTRANSFERASE II UniProtKB/TrEMBL
Pfam MGAT2 UniProtKB/TrEMBL
PROSITE PROKAR_LIPOPROTEIN UniProtKB/TrEMBL
Superfamily-SCOP Nucleotide-diphospho-sugar transferases UniProtKB/TrEMBL
UniProt G5BW66 ENTREZGENE, UniProtKB/TrEMBL