Ift56 (intraflagellar transport 56) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Ift56 (intraflagellar transport 56) Heterocephalus glaber
Analyze
Symbol: Ift56 (Ensembl: TTC26)
Name: intraflagellar transport 56 (Ensembl:tetratricopeptide repeat domain 26)
RGD ID: 18930435
Description: ENCODES a protein that exhibits intraciliary transport particle B binding (inferred); INVOLVED IN axoneme assembly (ortholog); cilium assembly (ortholog); intraciliary transport (ortholog); ASSOCIATED WITH BILIARY, RENAL, NEUROLOGIC, AND SKELETAL SYNDROME (ortholog); Caroli disease (ortholog); genetic disease (ortholog); FOUND IN centrosome (ortholog); cilium (ortholog); intraciliary transport particle B (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: intraflagellar transport protein 56; tetratricopeptide repeat domain 26; tetratricopeptide repeat protein 26; Ttc26
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476519,532,100 - 19,586,804 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476519,531,910 - 19,588,703 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Ift56
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476519,532,100 - 19,586,804 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476519,531,910 - 19,588,703 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
IFT56
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387139,133,778 - 139,191,986 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7139,133,744 - 139,191,986 (+)EnsemblGRCh38hg38GRCh38
GRCh377138,818,524 - 138,876,732 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 367138,469,064 - 138,525,086 (+)NCBINCBI36Build 36hg18NCBI36
Celera7133,556,647 - 133,612,709 (+)NCBICelera
Cytogenetic Map7q34NCBI
HuRef7133,128,180 - 133,184,243 (+)NCBIHuRef
CHM1_17138,752,226 - 138,808,298 (+)NCBICHM1_1
T2T-CHM13v2.07140,447,060 - 140,505,276 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27138,163,056 - 138,219,118 (+)NCBI
Ift56
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39638,358,400 - 38,404,582 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl638,358,404 - 38,404,582 (+)EnsemblGRCm39 Ensembl
GRCm38638,381,464 - 38,427,647 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl638,381,469 - 38,427,647 (+)EnsemblGRCm38mm10GRCm38
MGSCv37638,331,524 - 38,377,647 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36638,311,132 - 38,357,255 (+)NCBIMGSCv36mm8
Celera638,362,274 - 38,408,362 (+)NCBICelera
Cytogenetic Map6B1NCBI
cM Map617.76NCBI
Ift56
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8468,057,530 - 68,115,494 (+)NCBIGRCr8
mRatBN7.2467,090,622 - 67,154,707 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl467,090,660 - 67,147,903 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx472,032,338 - 72,090,212 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0467,953,414 - 68,011,307 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0466,351,188 - 66,409,069 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0466,090,178 - 66,147,998 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl466,090,209 - 66,148,001 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0465,904,439 - 65,960,061 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4465,922,943 - 65,981,026 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera462,110,206 - 62,167,871 (+)NCBICelera
Cytogenetic Map4q23NCBI
Ift56
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554943,861,519 - 3,905,399 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554943,861,679 - 3,905,499 (-)NCBIChiLan1.0ChiLan1.0
IFT56
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26175,943,920 - 176,005,051 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1727,954,179 - 28,015,305 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07131,092,241 - 131,150,109 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17143,578,586 - 143,636,362 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7143,579,500 - 143,636,362 (+)Ensemblpanpan1.1panPan2
IFT56
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1169,528,236 - 9,581,089 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl169,530,445 - 9,580,839 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1610,369,687 - 10,422,557 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0169,447,557 - 9,500,778 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl169,447,564 - 9,500,586 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1169,398,002 - 9,451,214 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0169,241,571 - 9,294,301 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0169,313,105 - 9,366,335 (-)NCBIUU_Cfam_GSD_1.0
Ift56
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511815,750,987 - 15,817,008 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365923,403,690 - 3,466,525 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365923,402,950 - 3,468,174 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
IFT56
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1810,462,669 - 10,509,565 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11810,462,670 - 10,509,595 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21810,945,088 - 10,992,004 (-)NCBISscrofa10.2Sscrofa10.2susScr3
IFT56
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.121107,863,335 - 107,927,637 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl21107,864,275 - 107,927,736 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660724,700,925 - 4,765,661 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000012816   ⟹   ENSHGLP00000012679
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462476519,532,100 - 19,586,804 (+)Ensembl
RefSeq Acc Id: XM_021263675   ⟹   XP_021119334
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476519,531,910 - 19,588,703 (+)NCBI
Protein Sequences
Protein RefSeqs XP_021119334 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000012679
  ENSHGLP00000058875
  ENSHGLP00100059877
GenBank Protein JAO01880 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_021119334   ⟸   XM_021263675
- UniProtKB: A0A0P6JXG9 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000012679   ⟸   ENSHGLT00000012816


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000009066 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSHGLG00100018992 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000012816 ENTREZGENE
  ENSHGLT00000050341 UniProtKB/TrEMBL
  ENSHGLT00100043832 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.10 UniProtKB/TrEMBL
InterPro TPR-like_helical_dom_sf UniProtKB/TrEMBL
  TTC26 UniProtKB/TrEMBL
NCBI Gene Ttc26 ENTREZGENE
PANTHER INTRAFLAGELLAR TRANSPORT PROTEIN 56 UniProtKB/TrEMBL
  PTHR14781 UniProtKB/TrEMBL
Pfam ANAPC3 UniProtKB/TrEMBL
Superfamily-SCOP SSF48452 UniProtKB/TrEMBL
UniProt A0A0P6JXG9 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-02-28 Ift56  intraflagellar transport 56  Ttc26  tetratricopeptide repeat domain 26  Symbol and/or name change 5135510 APPROVED