Fxyd3 (FXYD domain containing ion transport regulator 3) - Rat Genome Database

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Gene: Fxyd3 (FXYD domain containing ion transport regulator 3) Heterocephalus glaber
Analyze
Symbol: Fxyd3
Name: FXYD domain containing ion transport regulator 3
RGD ID: 18930381
Description: ENCODES a protein that exhibits ATPase binding (ortholog); INVOLVED IN monoatomic ion transport (inferred); regulation of monoatomic ion transport (inferred); ASSOCIATED WITH Brugada syndrome 5 (ortholog); diastolic heart failure (ortholog); dystonia (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: FXYD domain-containing ion transport regulator 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247948,385,138 - 8,391,670 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247948,385,138 - 8,391,723 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Fxyd3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247948,385,138 - 8,391,670 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247948,385,138 - 8,391,723 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
FXYD3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381935,115,823 - 35,124,324 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1935,115,823 - 35,124,324 (+)EnsemblGRCh38hg38GRCh38
GRCh371935,606,727 - 35,615,228 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361940,298,639 - 40,307,067 (+)NCBINCBI36Build 36hg18NCBI36
Build 341940,298,638 - 40,307,067NCBI
Celera1932,320,104 - 32,328,664 (+)NCBICelera
Cytogenetic Map19q13.12NCBI
HuRef1932,114,660 - 32,123,221 (+)NCBIHuRef
CHM1_11935,608,738 - 35,617,241 (+)NCBICHM1_1
T2T-CHM13v2.01937,660,439 - 37,669,003 (+)NCBIT2T-CHM13v2.0
Fxyd3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39730,769,960 - 30,776,122 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl730,767,597 - 30,776,129 (-)EnsemblGRCm39 Ensembl
GRCm38731,070,535 - 31,076,697 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl731,068,172 - 31,076,704 (-)EnsemblGRCm38mm10GRCm38
MGSCv37731,855,554 - 31,861,716 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36730,779,297 - 30,785,432 (-)NCBIMGSCv36mm8
Celera725,637,243 - 25,643,391 (-)NCBICelera
Cytogenetic Map7B1NCBI
cM Map719.29NCBI
Fxyd3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8195,432,918 - 95,440,129 (-)NCBIGRCr8
mRatBN7.2186,305,531 - 86,312,455 (-)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_Utx191,725,977 - 91,732,756 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01100,192,123 - 100,198,914 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0193,484,253 - 93,491,042 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0189,502,561 - 89,510,146 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl189,502,562 - 89,509,343 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0190,656,769 - 90,664,514 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4186,113,706 - 86,120,488 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1186,191,817 - 86,195,198 (-)NCBI
Celera180,674,540 - 80,681,283 (-)NCBICelera
Cytogenetic Map1q21NCBI
Fxyd3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554684,436,334 - 4,444,315 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554684,437,280 - 4,444,315 (+)NCBIChiLan1.0ChiLan1.0
FXYD3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22041,103,312 - 41,135,936 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11943,086,656 - 43,119,266 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01932,036,936 - 32,070,374 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11940,775,323 - 40,808,664 (+)NCBIpanpan1.1PanPan1.1panPan2
FXYD3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11117,452,952 - 117,459,632 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1117,453,272 - 117,456,193 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1116,853,609 - 116,860,236 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01118,050,547 - 118,057,103 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1118,050,867 - 118,053,788 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11117,613,152 - 117,619,696 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01117,238,490 - 117,245,100 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01118,294,967 - 118,301,602 (-)NCBIUU_Cfam_GSD_1.0
Fxyd3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934910,507,840 - 10,513,697 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365701,132,150 - 1,138,146 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365701,132,185 - 1,137,676 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FXYD3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl644,647,466 - 44,654,374 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1644,647,771 - 44,654,377 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2640,111,472 - 40,118,054 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FXYD3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1630,047,352 - 30,057,059 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl630,052,066 - 30,056,026 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660737,822,361 - 7,830,410 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000022381   ⟹   ENSHGLP00000022170
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247948,385,138 - 8,391,670 (-)Ensembl
RefSeq Acc Id: XM_013077491   ⟹   XP_012932945
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247948,385,138 - 8,391,723 (-)NCBI
RefSeq Acc Id: XM_013077492   ⟹   XP_012932946
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247948,385,138 - 8,391,723 (-)NCBI
RefSeq Acc Id: XM_021239850   ⟹   XP_021095509
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247948,385,138 - 8,391,677 (-)NCBI
Protein Sequences
Protein RefSeqs XP_012932945 (Get FASTA)   NCBI Sequence Viewer  
  XP_012932946 (Get FASTA)   NCBI Sequence Viewer  
  XP_021095509 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000022170
Reference Protein Sequences
RefSeq Acc Id: XP_012932946   ⟸   XM_013077492
- Peptide Label: isoform X2
RefSeq Acc Id: XP_012932945   ⟸   XM_013077491
- Peptide Label: isoform X1
- UniProtKB: G5BXK1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021095509   ⟸   XM_021239850
- Peptide Label: isoform X1
- UniProtKB: G5BXK1 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000022170   ⟸   ENSHGLT00000022381


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000015814 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000022381 ENTREZGENE
Gene3D-CATH Single helix bin UniProtKB/TrEMBL
InterPro FXYD_motif UniProtKB/TrEMBL
  Ion-transport_regulator_FXYD UniProtKB/TrEMBL
NCBI Gene Fxyd3 ENTREZGENE
PANTHER FXYD DOMAIN-CONTAINING ION TRANSPORT REGULATOR 3 UniProtKB/TrEMBL
  SODIUM/POTASSIUM-TRANSPORTING ATPASE SUBUNIT GAMMA UniProtKB/TrEMBL
Pfam ATP1G1_PLM_MAT8 UniProtKB/TrEMBL
PROSITE FXYD UniProtKB/TrEMBL
UniProt G5BXK1 ENTREZGENE, UniProtKB/TrEMBL