Ankrd28 (ankyrin repeat domain 28) - Rat Genome Database

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Gene: Ankrd28 (ankyrin repeat domain 28) Heterocephalus glaber
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Symbol: Ankrd28
Name: ankyrin repeat domain 28
RGD ID: 18930292
Description: ASSOCIATED WITH 3p deletion syndrome (ortholog); genetic disease (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624821965,854 - 1,155,128 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624821964,162 - 1,155,437 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Ankrd28
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624821965,854 - 1,155,128 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624821964,162 - 1,155,437 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
ANKRD28
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38315,667,236 - 15,859,814 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl315,667,236 - 15,859,771 (-)EnsemblGRCh38hg38GRCh38
GRCh37315,708,743 - 15,901,321 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36315,683,747 - 15,876,057 (-)NCBINCBI36Build 36hg18NCBI36
Build 34315,700,252 - 15,813,337NCBI
Celera315,646,877 - 15,840,010 (-)NCBICelera
Cytogenetic Map3p25.1NCBI
HuRef315,643,973 - 15,836,592 (-)NCBIHuRef
CHM1_1315,659,447 - 15,852,157 (-)NCBICHM1_1
T2T-CHM13v2.0315,669,546 - 15,862,982 (-)NCBIT2T-CHM13v2.0
Ankrd28
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391431,418,687 - 31,552,374 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1431,420,725 - 31,552,608 (-)EnsemblGRCm39 Ensembl
GRCm381431,698,768 - 31,830,567 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1431,698,768 - 31,830,651 (-)EnsemblGRCm38mm10GRCm38
MGSCv371432,513,201 - 32,643,601 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361430,529,024 - 30,659,424 (-)NCBIMGSCv36mm8
Celera1427,958,335 - 28,088,802 (-)NCBICelera
Cytogenetic Map14BNCBI
cM Map1419.4NCBI
Ankrd28
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8166,924,868 - 7,056,593 (-)NCBIGRCr8
mRatBN7.2166,918,487 - 7,050,244 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl166,914,336 - 7,050,249 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0167,816,876 - 7,879,023 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl167,818,667 - 7,928,518 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0167,737,522 - 7,800,288 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4167,166,559 - 7,248,739 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera168,148,113 - 8,278,476 (+)NCBICelera
Cytogenetic Map16p16NCBI
Ankrd28
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554308,014,583 - 8,197,434 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554308,014,631 - 8,197,434 (-)NCBIChiLan1.0ChiLan1.0
ANKRD28
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2215,651,816 - 15,845,914 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1315,656,580 - 15,850,704 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0315,591,890 - 15,785,997 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1315,928,978 - 16,122,608 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl315,932,020 - 16,057,647 (-)Ensemblpanpan1.1panPan2
ANKRD28
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12326,824,219 - 27,012,601 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2326,823,479 - 27,010,908 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2326,799,385 - 26,988,667 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02327,326,011 - 27,516,914 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2327,326,086 - 27,515,793 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12327,108,061 - 27,216,255 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02327,088,868 - 27,278,144 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02327,337,409 - 27,526,786 (+)NCBIUU_Cfam_GSD_1.0
Ankrd28
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118175,412,381 - 175,592,059 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364738,550,950 - 8,730,902 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364738,550,851 - 8,730,845 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ANKRD28
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl132,922,853 - 3,135,709 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1132,922,855 - 3,135,743 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2133,071,720 - 3,208,254 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ANKRD28
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11560,492,121 - 60,681,487 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1560,491,029 - 60,617,911 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604133,532,424 - 33,721,901 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


RefSeq Acc Id: ENSHGLT00000010928   ⟹   ENSHGLP00000010806
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_004624821965,854 - 1,155,128 (-)Ensembl
RefSeq Acc Id: ENSHGLT00000010929   ⟹   ENSHGLP00000010807
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_004624821965,854 - 1,078,013 (-)Ensembl
RefSeq Acc Id: XM_004864245   ⟹   XP_004864302
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624821965,854 - 1,079,074 (-)NCBI
RefSeq Acc Id: XM_013065343   ⟹   XP_012920797
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624821964,162 - 1,155,437 (-)NCBI
RefSeq Acc Id: XM_013065344   ⟹   XP_012920798
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624821964,162 - 1,155,209 (-)NCBI
RefSeq Acc Id: XM_021243958   ⟹   XP_021099617
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624821965,854 - 1,155,436 (-)NCBI
RefSeq Acc Id: XM_021243959   ⟹   XP_021099618
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624821964,162 - 1,155,261 (-)NCBI
RefSeq Acc Id: XM_021243960   ⟹   XP_021099619
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624821964,162 - 1,155,190 (-)NCBI
RefSeq Acc Id: XM_021243961   ⟹   XP_021099620
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624821964,162 - 1,080,480 (-)NCBI
RefSeq Acc Id: XM_021243962   ⟹   XP_021099621
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624821964,162 - 1,031,166 (-)NCBI
RefSeq Acc Id: XP_012920797   ⟸   XM_013065343
- Peptide Label: isoform X1
RefSeq Acc Id: XP_021099618   ⟸   XM_021243959
- Peptide Label: isoform X3
RefSeq Acc Id: XP_012920798   ⟸   XM_013065344
- Peptide Label: isoform X6
RefSeq Acc Id: XP_021099619   ⟸   XM_021243960
- Peptide Label: isoform X3
RefSeq Acc Id: XP_021099620   ⟸   XM_021243961
- Peptide Label: isoform X4
- UniProtKB: G5BMH4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021099621   ⟸   XM_021243962
- Peptide Label: isoform X7
RefSeq Acc Id: XP_021099617   ⟸   XM_021243958
- Peptide Label: isoform X2
RefSeq Acc Id: XP_004864302   ⟸   XM_004864245
- Peptide Label: isoform X5
- UniProtKB: G5BMH4 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000010807   ⟸   ENSHGLT00000010929
RefSeq Acc Id: ENSHGLP00000010806   ⟸   ENSHGLT00000010928


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000007756 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000010928 ENTREZGENE
  ENSHGLT00000010929 ENTREZGENE
Gene3D-CATH Ankyrin repeat-containing domain UniProtKB/TrEMBL
InterPro Ankyrin_rpt UniProtKB/TrEMBL
  Ankyrin_rpt-contain_sf UniProtKB/TrEMBL
NCBI Gene Ankrd28 ENTREZGENE
PANTHER ANK_REP_REGION DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  ANKYRIN REPEAT AND PROTEIN KINASE DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
Pfam Ank UniProtKB/TrEMBL
  Ank_2 UniProtKB/TrEMBL
  Ank_4 UniProtKB/TrEMBL
PRINTS ANKYRIN UniProtKB/TrEMBL
PROSITE ANK_REP_REGION UniProtKB/TrEMBL
  ANK_REPEAT UniProtKB/TrEMBL
SMART ANK UniProtKB/TrEMBL
Superfamily-SCOP Ankyrin repeat UniProtKB/TrEMBL
UniProt G5BMH4 ENTREZGENE, UniProtKB/TrEMBL